Previous Contig 008106:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006I06Sequence332008106 (5)sp|Q39230|SYS_ARATH3e-25Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7549002427 (6)sp|Q39230|SYS_ARATH8e-62Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7
JMSF010J06Sequence332008106 (5)sp|Q39230|SYS_ARATH2e-13Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7769002427 (6)sp|Q39230|SYS_ARATH2e-99Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7
JMSF033B18Sequence697008106 (5)sp|O81983|SYS_HELAN1e-73Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3755002427 (6)sp|Q39230|SYS_ARATH7e-86Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7
JMSF036E22Sequence699008106 (5)sp|O81983|SYS_HELAN1e-73Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3687002427 (6)sp|Q39230|SYS_ARATH2e-73Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|S71293|S7
JMSF052G03Sequence642008106 (5)sp|O81983|SYS_HELAN6e-49Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3936002427 (6)sp|O81983|SYS_HELANe-128Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS).>pir|T31430|T3

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036E22+ TTCTCAAAAAATCAAGGGCAAACATGATTAGT
JMSF033B18+ CTCAAAAAATCAAGGGCAAACATGATTAGT
                      ____________________________________________________________
consensus TTCTCAAAAAATCAAGGGCAAACATGATTAGT
 
. : . : . : . : . : . :
JMSF036E22+ GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
JMSF033B18+ GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
                      ____________________________________________________________
consensus GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
 
. : . : . : . : . : . :
JMSF036E22+ GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
JMSF033B18+ GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
                      ____________________________________________________________
consensus GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
 
. : . : . : . : . : . :
JMSF036E22+ CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
JMSF033B18+ CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
JMSF052G03+ TCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
                      ____________________________________________________________
consensus CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
 
. : . : . : . : . : . :
JMSF036E22+ CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
JMSF033B18+ CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
JMSF052G03+ CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
                      ____________________________________________________________
consensus CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
 
. : . : . : . : . : . :
JMSF036E22+ GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
JMSF033B18+ GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
JMSF052G03+ GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
                      ____________________________________________________________
consensus GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
 
. : . : . : . : . : . :
JMSF036E22+ TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
JMSF033B18+ TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
JMSF006I06+ CTTCAGCTTGGCCACTTCTTTGTTG
JMSF052G03+ TTCTTAATTAACTCACTTGCATCTTCTTTGGCTATCTTCAGCTTGGCCACTGCTTTGTTG
                      ____________________________________________________________
consensus TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
 
. : . : . : . : . : . :
JMSF036E22+ ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF033B18+ ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF010J06+ ACTTTG
JMSF006I06+ ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF052G03+ ATCTTGTTAAATTCTTTACGCAAATTATCGAACTCAAATTGACGCTGACGCCACACTTTG
                      ____________________________________________________________
consensus ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
 
. : . : . : . : . : . :
JMSF036E22+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF033B18+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF010J06+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF006I06+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF052G03+ TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
                      ____________________________________________________________
consensus TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
 
. : . : . : . : . : . :
JMSF036E22+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF033B18+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF010J06+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF006I06+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF052G03+ CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
                      ____________________________________________________________
consensus CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
 
. : . : . : . : . : . :
JMSF036E22+ TTATGGTTTGATCT
JMSF033B18+ TTATGGTTTGATCT
JMSF010J06+ TAATGATTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
JMSF006I06+ TTATGGTTTGATCT
JMSF052G03+ TAATGATTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
                      ____________________________________________________________
consensus TTATGGTTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
 
. : . : . : . : . : . :
JMSF010J06+ AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
JMSF052G03+ AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
                      ____________________________________________________________
consensus AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
 
. : . : . : . : . : . :
JMSF010J06+ GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
JMSF052G03+ GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
                      ____________________________________________________________
consensus GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
 
. : . : . : . : . : . :
JMSF010J06+ CGCGTGCGGCGTCTCAAAAC
JMSF052G03+ CGCGTGCGGCGTCTCAAAACCACATAATGAAAGTGTAAAAATAATAATAATAATAAAATC
                      ____________________________________________________________
consensus CGCGTGCGGCGTCTCAAAACCACATAATGAAAGTGTAAAAATAATAATAATAATAAAATC