Previous Contig 008048:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E09Sequence509008048 (2)gb:AY093731_15753917e-40Arabidopsis thaliana AT5g62130/mtg10_150 mRNA, complete cds.>gb:AF410293_1797107716008373 (2)gb:AC135422_17422912e-59Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0043H23, complet
JMSF051F23Sequence656008048 (2)gb:AY093731_15753919e-52Arabidopsis thaliana AT5g62130/mtg10_150 mRNA, complete cds.>gb:AF410293_1797107757008373 (2)gb:AC135422_17422914e-68Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0043H23, complet

Alignment

This contig is upended


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JMSF051F23+ CTGAATGGCAGCTTATAATTAATTAGAATGAAGAAGGATACCCAGCCATGGGAATT
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consensus CTGAATGGCAGCTTATAATTAATTAGAATGAAGAAGGATACCCAGCCATGGGAATT
 
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JMFF005E09+ TAAACAC
JMSF051F23+ GTATAGCAAGATTGAGAGCAGAGAGAGCCACAGAAACAGGTTCCTGAATTCCGTAAACAC
                      ____________________________________________________________
consensus GTATAGCAAGATTGAGAGCAGAGAGAGCCACAGAAACAGGTTCCTGAATTCCGTAAACAC
 
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JMFF005E09+ GTTGAAATGGCCATTTTCCATGATACTTGACAGGCTTGAGCCCAAGTTTTTGTCTCTCTT
JMSF051F23+ GTTGAAATGGCCATTTTCCATGATACTTGACAGGCTTGAGCCCAAGTTTTTGTCTCTCTT
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consensus GTTGAAATGGCCATTTTCCATGATACTTGACAGGCTTGAGCCCAAGTTTTTGTCTCTCTT
 
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JMFF005E09+ CCTCCCTGGCCAGCATACAATGATATCGACAATCACTGAGACAATCCCACTGTTTCCACT
JMSF051F23+ CCTCCCTGGCCAGCATACAATGATATCGACAATCACTGAGACAATCCCACTGTTTCCACT
                      ____________________________________________________________
consensus CCTCCCTGGCCAGCATACAATGATATCGACAATCACTGAGACAATCCCACTGTTTCCACT
 
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JMFF005E09+ TTAAATAAAGTGGTTCTTGCAAATACCACGGACCATCAATGGGATTCCCACCAGATGAAA
JMSF051F23+ TTAAATAAAGTGGTTCTTGCAAATACCACGGACCATCAATGGGATTCCCACCAGATGAAA
                      ____________________________________________________________
consensus TTAAATAAAGTGGTTCTTGCAAATACCACGGACCATCAATGGGATTCCCACCAGATGAAA
 
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JMFF005E09+ AATTACAATGCTGAAAGCATTTAACCCCTACACATCCACTCTTCTCACATTGCTGAACAC
JMSF051F23+ AATTACAATGCTGAAAGCATTTAACCCCTACACATCCACTCTTCTCACATTGCTGAACAC
                      ____________________________________________________________
consensus AATTACAATGCTGAAAGCATTTAACCCCTACACATCCACTCTTCTCACATTGCTGAACAC
 
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JMFF005E09+ AAACTTTGTAAATCGGATCGGCATCTCCATCGCTGGCGTTGAGAACTGCAAAAATCGAAG
JMSF051F23+ AAACTTTGTAAATCGGATCGGCATCTCCATCGCTGGCGTTGAGAACTGCAAAAATCGAAG
                      ____________________________________________________________
consensus AAACTTTGTAAATCGGATCGGCATCTCCATCGCTGGCGTTGAGAACTGCAAAAATCGAAG
 
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JMFF005E09+ AAAAAAGAGCGAAGAGCAGAACCAAACGA
JMSF051F23+ AAAAAAGAGCGAAGAGCAGAACCAAACGACGCGGTGCCATAGGTGCGAGCACTGTACAGG
                      ____________________________________________________________
consensus AAAAAAGAGCGAAGAGCAGAACCAAACGACGCGGTGCCATAGGTGCGAGCACTGTACAGG
 
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JMSF051F23+ AGGCAGATGGAGAAGAAAGTCAAAAGGCTAAAATTTCGAGCGCTTTCTACAGTGTCAACG
                      ____________________________________________________________
consensus AGGCAGATGGAGAAGAAAGTCAAAAGGCTAAAATTTCGAGCGCTTTCTACAGTGTCAACG
 
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JMSF051F23+ GAGAAAAAAGGCGAAATCTCGCTATGGCATCATTGACTGATGAGCTTCCATTGAAATATA
                      ____________________________________________________________
consensus GAGAAAAAAGGCGAAATCTCGCTATGGCATCATTGACTGATGAGCTTCCATTGAAATATA
 
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JMSF051F23+ AAGAGAGAGTGTGCAGATTGGTGAGTTCGGCGGATATGAAATCGATAGAAGACGTGAGCC
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consensus AAGAGAGAGTGTGCAGATTGGTGAGTTCGGCGGATATGAAATCGATAGAAGACGTGAGCC