Previous Contig 008043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS080D07Sequence535008043 (3)gb:AB022214_15150052e-28Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5F14.
JMFS147D08Sequence619008043 (3)gb:AB022214_15150055e-26Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5F14.
JMSF051E21Sequence632008043 (3)gb:AB022214_15150057e-26Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5F14.731024459pir|C85065|C850657e-80kinesin-like protein [imported] - Arabidopsis thaliana>gb:ATCHRIV15_1544363 Arab

Alignment

This contig is upended


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JMFS080D07+                                                     GGGCTTCCGATTTTTCAG
JMFS147D08+                                                     GGGCTTCCGATTTTTCAG
JMSF051E21+                                       ACTAAGAGAATTAAGGGCTTCCGATTTTTCAG
                      ____________________________________________________________
consensus                                         ACTAAGAGAATTAAGGGCTTCCGATTTTTCAG
 
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JMFS080D07+           ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
JMFS147D08+           ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
JMSF051E21+           ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
                      ____________________________________________________________
consensus             ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
 
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JMFS080D07+           TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
JMFS147D08+           TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
JMSF051E21+           TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
                      ____________________________________________________________
consensus             TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
 
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JMFS080D07+           CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
JMFS147D08+           CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
JMSF051E21+           CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
                      ____________________________________________________________
consensus             CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
 
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JMFS080D07+           GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
JMFS147D08+           GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
JMSF051E21+           GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
                      ____________________________________________________________
consensus             GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
 
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JMFS080D07+           TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
JMFS147D08+           TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
JMSF051E21+           TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
                      ____________________________________________________________
consensus             TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
 
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JMFS080D07+           CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
JMFS147D08+           CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
JMSF051E21+           CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
                      ____________________________________________________________
consensus             CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
 
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JMFS080D07+           TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
JMFS147D08+           TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
JMSF051E21+           TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
                      ____________________________________________________________
consensus             TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
 
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JMFS080D07+           CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
JMFS147D08+           CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
JMSF051E21+           CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
                      ____________________________________________________________
consensus             CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
 
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JMFS080D07+           TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGC                       
JMFS147D08+           TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGCTACAGGAGGCTTATTCTGGCTCT
JMSF051E21+           TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGCTACAGGAGGCTTATTCTGGCTCT
                      ____________________________________________________________
consensus             TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGCTACAGGAGGCTTATTCTGGCTCT
 
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JMFS147D08+           TGGGAGCCATTTGAAAGTGAGCGCAATTATGGAAGGAGATGTAGAGAGAGAAACAG    
JMSF051E21+           TGGGAGCCATTTGAAAGTGAGCGCAATTATGGAAGGAGATGTAGAGAGAGAAACAGCACC
                      ____________________________________________________________
consensus             TGGGAGCCATTTGAAAGTGAGCGCAATTATGGAAGGAGATGTAGAGAGAGAAACAGCACC