clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS080D07 | Sequence | 535 | 008043 (3) | gb:AB022214_1515005 | 2e-28 | Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5F14. | |||||
JMFS147D08 | Sequence | 619 | 008043 (3) | gb:AB022214_1515005 | 5e-26 | Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5F14. | |||||
JMSF051E21 | Sequence | 632 | 008043 (3) | gb:AB022214_1515005 | 7e-26 | Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5F14. | 731 | 024459 | pir|C85065|C85065 | 7e-80 | kinesin-like protein [imported] - Arabidopsis thaliana>gb:ATCHRIV15_1544363 Arab |
This contig is upended
. : . : . : . : . : . :
JMFS080D07+ GGGCTTCCGATTTTTCAG
JMFS147D08+ GGGCTTCCGATTTTTCAG
JMSF051E21+ ACTAAGAGAATTAAGGGCTTCCGATTTTTCAG
____________________________________________________________
consensus ACTAAGAGAATTAAGGGCTTCCGATTTTTCAG
. : . : . : . : . : . :
JMFS080D07+ ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
JMFS147D08+ ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
JMSF051E21+ ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
____________________________________________________________
consensus ATTCCTCCTTCTTCAAATTGTCCTGTAACACAGCAATATTTTTCCTCAACTCCATAATGA
. : . : . : . : . : . :
JMFS080D07+ TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
JMFS147D08+ TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
JMSF051E21+ TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
____________________________________________________________
consensus TTGCATTCAATTCCTCTTCCTTTGATTTCATTAGCATATCCATCTCGCTGCACCTCTTCT
. : . : . : . : . : . :
JMFS080D07+ CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
JMFS147D08+ CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
JMSF051E21+ CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
____________________________________________________________
consensus CTGCTGATTCTAGCAAGCTTTTGAGTGACTCCTGTTCAGAAATATAGTTTCCCTCAAGCT
. : . : . : . : . : . :
JMFS080D07+ GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
JMFS147D08+ GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
JMSF051E21+ GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
____________________________________________________________
consensus GTTGGAACCACCTAATGCACTGCTTAAGCCTTCTAATATATTCCGACATTTGATCACATT
. : . : . : . : . : . :
JMFS080D07+ TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
JMFS147D08+ TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
JMSF051E21+ TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
____________________________________________________________
consensus TTTCCTTCATATTATACTTGTTCTTAGTTTTCAGCTTCTCAACTAGCAATGCTTCAACAT
. : . : . : . : . : . :
JMFS080D07+ CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
JMFS147D08+ CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
JMSF051E21+ CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
____________________________________________________________
consensus CTTCCTTGTTAAACTCAATAACTCCACAATCTGAGCCAGCACTACTTGGCGGTCCACTGG
. : . : . : . : . : . :
JMFS080D07+ TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
JMFS147D08+ TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
JMSF051E21+ TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
____________________________________________________________
consensus TTGGAGGCAGATCTGCACTCCCATTTACCACAGCAAACGCCTGTCTACCAGGTCTAACTC
. : . : . : . : . : . :
JMFS080D07+ CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
JMFS147D08+ CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
JMSF051E21+ CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
____________________________________________________________
consensus CAGACGGCATCTTTGGATTCCCAATCTTTCTTTTCTTATCTACTGACACCTCATCCACTG
. : . : . : . : . : . :
JMFS080D07+ TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGC
JMFS147D08+ TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGCTACAGGAGGCTTATTCTGGCTCT
JMSF051E21+ TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGCTACAGGAGGCTTATTCTGGCTCT
____________________________________________________________
consensus TGAACTTTCCGTTGGATGGACTCGAAGGAGTTGGAGCTACAGGAGGCTTATTCTGGCTCT
. : . : . : . : . : . :
JMFS147D08+ TGGGAGCCATTTGAAAGTGAGCGCAATTATGGAAGGAGATGTAGAGAGAGAAACAG
JMSF051E21+ TGGGAGCCATTTGAAAGTGAGCGCAATTATGGAAGGAGATGTAGAGAGAGAAACAGCACC
____________________________________________________________
consensus TGGGAGCCATTTGAAAGTGAGCGCAATTATGGAAGGAGATGTAGAGAGAGAAACAGCACC