| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016B13 | Sequence | 573 | 014379 | gb:AY062693_1565349 | 3e-13 | Arabidopsis thaliana similar to valyl tRNA synthetase (At1g14610; T5E21.11) mRNA | 557 | 008040 (7) | gb:CPL491254_1648655 | 2e-39 | Craterostigma plantagineum mRNA for transcription factor R18 (r18 gene). |
| JMFN032G02 | Sequence | 618 | 008040 (7) | gb:AB079499_1523902 | 1e-21 | Nicotiana benthamiana NbrbohB mRNA for respiratory burst oxidase homolog, comple | |||||
| JMFN035I21 | Sequence | 630 | 008040 (7) | gb:CPL491254_1648655 | 1e-26 | Craterostigma plantagineum mRNA for transcription factor R18 (r18 gene). | |||||
| JMSF051D09 | Sequence | 660 | 008040 (7) | gb:AF147783_1772312 | 2e-22 | Lycopersicon esculentum whitefly-induced gp91-phox (Wfi1) gene, complete cds.>gb | 699 | 008040 (7) | gb:CPL491254_1648655 | 4e-32 | Craterostigma plantagineum mRNA for transcription factor R18 (r18 gene). |
| JMSF052D09 | Sequence | 662 | 008040 (7) | gb:AF147783_1772312 | 1e-22 | Lycopersicon esculentum whitefly-induced gp91-phox (Wfi1) gene, complete cds.>gb | 433 | 008040 (7) | gb:CPL491254_1648655 | 2e-24 | Craterostigma plantagineum mRNA for transcription factor R18 (r18 gene). |
This contig is upended
. : . : . : . : . : . :
rJMFF016B13- AATGAAC
____________________________________________________________
consensus AATGAAC
. : . : . : . : . : . :
rJMFF016B13- TCCCACTTTTACAGCACAAATACATAAGTCCCTATTGGTAACCAGTTTTATGATCTCTTC
rJMSF051D09- AAATACATAAGTCCCTATTGGTAACCAGTTTTATGATCTCTTC
____________________________________________________________
consensus TCCCACTTTTACAGCACAAATACATAAGTCCCTATTGGTAACCAGTTTTATGATCTCTTC
. : . : . : . : . : . :
rJMFF016B13- TATTTTTTTATTTTTTTTTTAANAAGGTGCAAAATACATAAACAGNGGCTANAAGGTTTT
rJMSF051D09- TATTTTTTTATTTTTTTTTTAAGAAGGGGCAAAATACATAAACNGGGGCTAGAAGGTTTT
____________________________________________________________
consensus TATTTTTTTATTTTTTTTTTAAGAAGGTGCAAAATACATAAACAGGGGCTAGAAGGTTTT
. : . : . : . : . : . :
rJMFF016B13- AAACTTCATATGAATGTGAAATCATTTCTTGGTTCANCATGCCATANCTCTCTTTTACAA
rJMSF052D09- GCCATAGCTCTCTTTTACAA
rJMSF051D09- AAACTTCATATGAANGNGAATTCATTTCTNGGTTCAGCANGCCATAGCTCTCTTTTACAA
____________________________________________________________
consensus AAACTTCATATGAATGTGAATTCATTTCTTGGTTCAGCATGCCATAGCTCTCTTTTACAA
. : . : . : . : . : . :
rJMFF016B13- TTCTTCCTGCAACAACCCTTGTACCGCATGGAGGAGGAGCACTACCGCTCCTGGAAGCAA
rJMSF052D09- TTCTTCCNGCAACAACCCTNGTACCGCANGGAGGAGGAGCACTAGCGCNCCNGGAAGNAA
rJMSF051D09- TTCTTCCNGCAACAACCCTTGTACCGCAGGGAGGAGGAGCACTAGCGCTCCNGGAAGCAA
JMFN035I21+ GGAAGCAA
____________________________________________________________
consensus TTCTTCCTGCAACAACCCTTGTACCGCATGGAGGAGGAGCACTAGCGCTCCTGGAAGCAA
. : . : . : . : . : . :
rJMFF016B13- TATTGAACATTTCATATACATTTGTTCAAACAAAACAACATCTTCAGTGCATGCATCACC
rJMSF052D09- TATTGAACATTTCATATACATTNGTTCAAACAAAACAACATCTTCNGGGCANGCATCACC
rJMSF051D09- TATTGAACATTTCATATACATTTGTTCAAACAAAACAACATCTTCAGNGCANGCATCACC
JMFN035I21+ TATTGAACATTTCATATACA-TTGTTCAAACAAAACAACATCTTCAGTGCATGCATCACC
____________________________________________________________
consensus TATTGAACATTTCATATACATTTGTTCAAACAAAACAACATCTTCAGTGCATGCATCACC
. : . : . : . : . : . :
rJMFF016B13- TTTGCAGT-TCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
rJMSF052D09- TTTGCAGT-TCCATACAAAACTANATACAGGATACTTCTTCTCTCCACCACCATNGANAA
rJMSF051D09- TTTGCAGT-TCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
JMFN035I21+ -TTGCAGTNTCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
____________________________________________________________
consensus TTTGCAGT-TCCATACAAAACTAGATACAGGATACTTCTTCTCTCCACCACCATTGACAA
. : . : . : . : . : . :
rJMFF016B13- CATCAATATGCTCCTTGATACNCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
rJMSF052D09- CATCAATANGCTCCTNGATACGCNCAANAAACGNANCCTNGTNGCCCGTCAANCNCAATC
rJMSF051D09- CATCAATATGCTCCTTGATACGCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
JMFN035I21+ CATCAATATGCTCCTTGATACGCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
____________________________________________________________
consensus CATCAATATGCTCCTTGATACGCTCAATAAACGTAGCCTTGTTGCCCGTCAATCTCAATC
. : . : . : . : . : . :
rJMFF016B13- CATGCTTCCTTAAATAGACCTTGCACTGATCAATTTTCAGCTTTTCAATCTCACCACCAT
rJMSF052D09- CNNGCTNCCTTAAATAGACCTTGCNCNGANCAATTTTCAGCTTTTCAATCTCACCANCNT
rJMSF051D09- CANGCTTCCTTAAATAGACCTTGCACNGATCAATTTTCAGCTTTTCAATCTCACCAGCAT
JMFN035I21+ CATGCTTCCTTAAATAGACCTTGCACTGATCAATTTTCAGCTTTTCAATCTCACCAGCAT
____________________________________________________________
consensus CATGCTTCCTTAAATAGACCTTGCACTGATCAATTTTCAGCTTTTCAATCTCACCAGCAT
. : . : . : . : . : . :
rJMFF016B13- TCAAAGGGAGAAACTGCAAAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
rJMSF052D09- TCAAAGGGANAANCNGCNNAACAGTNGACAAACATGTATNGACCACTTCGGTANCTGAAC
rJMSF051D09- TCAAAGGGAGAAACNGCANAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
JMFN035I21+ TCAAAGGGAGAAACTGCAGAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
____________________________________________________________
consensus TCAAAGGGAGAAACTGCAGAACAGTTGACAAACATGTATTGACCACTTCGGTATCTGAAC
. : . : . : . : . : . :
rJMFF016B13- CCC
rJMSF052D09- CCC
rJMSF051D09- CCCNGNGGCTNGGACATATGAAGGGACAAAACATTTCCAGAATAGA-------CTTAAGA
JMFN035I21+ CCCTGTGGCTTGGACATATGAAGGGACAAAACATTTCCAGAATAGACTGCCACCTTAAGA
____________________________________________________________
consensus CCCTGTGGCTTGGACATATGAAGGGACAAAACATTTCCAGAATAGACTGCCACCTTAAGA
. : . : . : . : . : . :
rJMSF051D09- ATCTTGACAGGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
JMFN035I21+ ATCTTGACAGGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
JMFN032G02+ GGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
____________________________________________________________
consensus ATCTTGACAGGCTTAATGCTAAATCTGAATGATCTGAGCAGTTTTTCACAAGCATAAATT
. : . : . : . : . : . :
rJMSF051D09- ACCATGGGAACAGCCAAGTACATCCATGTC
JMFN035I21+ ACCATGGGAACAGCCAAGTACATCCATGTCTGTCATCACAACTTCATCATCTCAGGGCTC
JMFN032G02+ ACCATGGGAACAGCCAAGTACATCCATGTCTGTCATCACAACTTCATCATCTCAGGGCTC
____________________________________________________________
consensus ACCATGGGAACAGCCAAGTACATCCATGTCTGTCATCACAACTTCATCATCTCAGGGCTC
. : . : . : . : . : . :
JMFN035I21+ GCGTGTATCAGCTTTGGGAAATCACACGTCAAGTGAGCTATTGCCTGTATTCCCACACCA
JMFN032G02+ GCGTGTATCAGCTTTGGGAAATCACACGTCAAGTGAGCTATTGCCTGTATTCCCACACCA
____________________________________________________________
consensus GCGTGTATCAGCTTTGGGAAATCACACGTCAAGTGAGCTATTGCCTGTATTCCCACACCA
. : . : . : . : . : . :
JMFN035I21+ ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
JMFN032G02+ ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
JMSF052D09+ ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
JMSF051D09+ ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
____________________________________________________________
consensus ATCGCCACAGCCACCGCGATCACTTTGTGAAAATTAAGGTTGTCATCAAAAGGGACCGCG
. : . : . : . : . : . :
JMFN035I21+ ACGCCTAACTTGGTCAGTTGGTC
JMFN032G02+ ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGXXXX
JMSF052D09+ ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGACTG
JMSF051D09+ ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGACTG
____________________________________________________________
consensus ACGCCTAACTTGGTCAGTTGGTCTTGTTCCTGAGCCAGGTGATGGTGTTCCTGCGGACTG
. : . : . : . : . : . :
JMFN032G02+ XXXXXXXXXXXXTGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
JMSF052D09+ GTAACAGGATTATGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
JMSF051D09+ GTAACAGGATTATGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
____________________________________________________________
consensus GTAACAGGATTATGGCCATGTTGAGCTTCAGTGTTTCTGCAGCACCTTTGGCCAAACAAA
. : . : . : . : . : . :
JMFN032G02+ CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
JMSF052D09+ CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
JMSF051D09+ CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
____________________________________________________________
consensus CGCAGACGCCCATAACGCAATACGCAGCTCACCTTTCAAATCTTTCTTTTGGAGGCAGCA
. : . : . : . : . : . :
JMFN032G02+ ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
JMSF052D09+ ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
JMSF051D09+ ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
____________________________________________________________
consensus ATGCCCTCTTTGACCGCAGCCCTTTTACTATAGATGTTACCTTTTCCATCTCATCTTCAA
. : . : . : . : . : . :
JMFN032G02+ CTTTATCATTATTCCAGCTCT
JMSF052D09+ CTTTATCATTATTCCAGCTCTATCTACACCACCGCGGCCTCCTCGCTGGTCAATCGCCAC
JMSF051D09+ CTTTATCATTATTCCAGCTCTATCTACACCACCGCGGCCTCCTCGCTGGTCAATCGCCAC
____________________________________________________________
consensus CTTTATCATTATTCCAGCTCTATCTACACCACCGCGGCCTCCTCGCTGGTCAATCGCCAC
. : . : . : . : . : . :
JMSF052D09+ CTCGCCACCACCAATCGAGGACCTCGCCTGTTGGTCGCCGCTGCCTCGCTCACTATCCTC
JMSF051D09+ CTCGCCACCACCAATCGAGGACCTCGCCTGTTGGTCGCCGCTGCCTCGCTCACTATCCTC
____________________________________________________________
consensus CTCGCCACCACCAATCGAGGACCTCGCCTGTTGGTCGCCGCTGCCTCGCTCACTATCCTC
. : . : . : . : . : . :
JMSF052D09+ GTCGCAGCCGTAGGAACTCCAAGTCTCCAGGAAGGCGGAAGCATAAAGAAATTAATTGTT
JMSF051D09+ GTCGCAGCCGTAGGAACTCCAAGTCTCCAGGAAGGCGGAAGCATAAAGAAATTAATTGTT
____________________________________________________________
consensus GTCGCAGCCGTAGGAACTCCAAGTCTCCAGGAAGGCGGAAGCATAAAGAAATTAATTGTT
. : . : . : . : . : . :
JMSF052D09+ TTCTAAATTGGGAATTAGGGTTAGAATGGTGTATAGAAAGGGGGTGCAAACGAACCTGAG
JMSF051D09+ TTCTAAATTGGGAATTAGGGTTAGAATGGTGTATAGAAAGGGGGTGCAAACGAACCTGAG
____________________________________________________________
consensus TTCTAAATTGGGAATTAGGGTTAGAATGGTGTATAGAAAGGGGGTGCAAACGAACCTGAG
. : . : . : . : . : . :
JMSF052D09+ GGTGAAGACTGAAGACGGAGCCCAGCCGGCGACAGTTGAAGACGAAGCCGAGCGAAGTGG
JMSF051D09+ GGTGAAGACTGAAGACGGAGCCCAGCCGGCGACAGTTGAAGACGAAGCCGAGCGAAGTGG
____________________________________________________________
consensus GGTGAAGACTGAAGACGGAGCCCAGCCGGCGACAGTTGAAGACGAAGCCGAGCGAAGTGG
. : . : . : . : . : . :
JMSF052D09+ CGAGACGCAGAGGAAGCGGTGGTTCACGACTCGCGAGATAGAGCGACAAAGTCTATTTTC
JMSF051D09+ CGAGACGCAGAGGAAGCGGTGGTTCACGACTCGCGAGATAGAGCGACAAAGTCTATTTTC
____________________________________________________________
consensus CGAGACGCAGAGGAAGCGGTGGTTCACGACTCGCGAGATAGAGCGACAAAGTCTATTTTC