clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF050M15 | Sequence | 664 | 008014 (2) | gb:AY085057_1570139 | 4e-08 | Arabidopsis thaliana clone 125943 mRNA, complete sequence. | 770 | 013902 (2) | gb:AY085057_1570139 | 0.036 | Arabidopsis thaliana clone 125943 mRNA, complete sequence. |
JMSF050O19 | Sequence | 638 | 008014 (2) | gb:AY085057_1570139 | 4e-08 | Arabidopsis thaliana clone 125943 mRNA, complete sequence. | 758 | 013902 (2) | gb:AY085057_1570139 | 0.035 | Arabidopsis thaliana clone 125943 mRNA, complete sequence. |
This contig is upended
. : . : . : . : . : . :
JMSF050M15+ GTGG
____________________________________________________________
consensus GTGG
. : . : . : . : . : . :
JMSF050O19+ TTAGGTACAGAGAGATGTGATCATTAACCTTCTTGTTT
JMSF050M15+ AGGTTGCTTGTGTCCGCCAGTTTTAGGTACAGAGAGATGTGATCATTAACCTTCTTGTTT
____________________________________________________________
consensus AGGTTGCTTGTGTCCGCCAGTTTTAGGTACAGAGAGATGTGATCATTAACCTTCTTGTTT
. : . : . : . : . : . :
JMSF050O19+ TTGTTTCCATTTGGGTGGATAACCAACTTCCTGCAAACGCAAATCAAACCAATTCAGACA
JMSF050M15+ TTGTTTCCATTTGGGTGGATAACCAACTTCCTGCAAACGCAAATCAAACCAATTCAGACA
____________________________________________________________
consensus TTGTTTCCATTTGGGTGGATAACCAACTTCCTGCAAACGCAAATCAAACCAATTCAGACA
. : . : . : . : . : . :
JMSF050O19+ GTCGGCTGAATAACCACAATGTTATAAGTTTAACTGTCCAGTGTGAGTAGTTATGGGACA
JMSF050M15+ GTCGGCTGAATAACCACAATGTTATAAGTTTAACTGTCCAGTGTGAGTAGTTATGGGACA
____________________________________________________________
consensus GTCGGCTGAATAACCACAATGTTATAAGTTTAACTGTCCAGTGTGAGTAGTTATGGGACA
. : . : . : . : . : . :
JMSF050O19+ TTTTGGTTTAACCCGGTCACTTGAACAGTTATGTTGCAACATAAATTAATTTACCTCTTT
JMSF050M15+ TTTTGGTTTAACCCGGTCACTTGAACAGTTATGTTGCAACATAAATTAATTTACCTCTTT
____________________________________________________________
consensus TTTTGGTTTAACCCGGTCACTTGAACAGTTATGTTGCAACATAAATTAATTTACCTCTTT
. : . : . : . : . : . :
JMSF050O19+ GCAGTCTGATTAGGGTCATATGGTAAAGTTTATTCAGTGCACACCCTCTAATGTTAACTG
JMSF050M15+ GCAGTCTGATTAGGGTCATATGGTAAAGTTTATTCAGTGCACACCCTCTAATGTTAACTG
____________________________________________________________
consensus GCAGTCTGATTAGGGTCATATGGTAAAGTTTATTCAGTGCACACCCTCTAATGTTAACTG
. : . : . : . : . : . :
JMSF050O19+ CAAGTGGCCTATTGGCCTTTTTTGTTTATCAGTTATAAGCAACCTAAACTAGTTTACTTT
JMSF050M15+ CAAGTGGCCTATTGGCCTTTTTTGTTTATCAGTTATAAGCAACCTAAACTAGTTTACTTT
____________________________________________________________
consensus CAAGTGGCCTATTGGCCTTTTTTGTTTATCAGTTATAAGCAACCTAAACTAGTTTACTTT
. : . : . : . : . : . :
JMSF050O19+ CTTGTGGTCCAGTTAAGGTCACAAAGAATGATTTATCTGGTGTACACTTTCGGAAAGTTT
JMSF050M15+ CTTGTGGTCCAGTTAAGGTCACAAAGAATGATTTATCTGGTGTACACTTTCGGAAAGTTT
____________________________________________________________
consensus CTTGTGGTCCAGTTAAGGTCACAAAGAATGATTTATCTGGTGTACACTTTCGGAAAGTTT
. : . : . : . : . : . :
JMSF050O19+ GATGGTAAGTTAAGTTAGTTAATTACCATTTGTAGCCTCCGACATCAAAAGCATCTGAAA
JMSF050M15+ GATGGTAAGTTAAGTTAGTTAATTACCATTTGTAGCCTCCGACATCAAAAGCATCTGAAA
____________________________________________________________
consensus GATGGTAAGTTAAGTTAGTTAATTACCATTTGTAGCCTCCGACATCAAAAGCATCTGAAA
. : . : . : . : . : . :
JMSF050O19+ TGTATTGGTCTATGTTGTTCCTGAGCAATGACACCGATTGAATCTTGACCACGTAGTGAC
JMSF050M15+ TGTATTGGTCTATGTTGTTCCTGAGCAATGACACCGATTGAATCTTGACCACGTAGTGAC
____________________________________________________________
consensus TGTATTGGTCTATGTTGTTCCTGAGCAATGACACCGATTGAATCTTGACCACGTAGTGAC
. : . : . : . : . : . :
JMSF050O19+ TGGGGGGTGCGTCTGAAACTGTTTTCACAATTCCTTCTTCCTTTGGGGTATCAGCCATGG
JMSF050M15+ TGGGGGGTGCGTCTGAAACTGTTTTCACAATTCCTTCTTCCTTTGGGGTATCAGCCATGG
____________________________________________________________
consensus TGGGGGGTGCGTCTGAAACTGTTTTCACAATTCCTTCTTCCTTTGGGGTATCAGCCATGG
. : . : . : . : . : . :
JMSF050O19+ AAAATAATTACTTTGCTATAAATATATATTAATTGAGAGTTTGTGTGGTTTGAGTTTACC
JMSF050M15+ AAAATAATTACTTTGCTATAAATATATATTAATTGAGAGTTTGTGTGGTTTGAGTTTACC
____________________________________________________________
consensus AAAATAATTACTTTGCTATAAATATATATTAATTGAGAGTTTGTGTGGTTTGAGTTTACC