clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF030F01 | Sequence | 394 | 008011 (3) | pir|T00979|T00979 | 7e-15 | hypothetical protein At2g26460 [imported] - Arabidopsis thaliana>gb:AC002505_153 | |||||
JMSF050L18 | Sequence | 690 | 008011 (3) | pir|T00979|T00979 | 7e-57 | hypothetical protein At2g26460 [imported] - Arabidopsis thaliana>gb:AC002505_153 | 763 | 013900 (3) | pir|T00979|T00979 | 9e-64 | hypothetical protein At2g26460 [imported] - Arabidopsis thaliana>gb:AC002505_153 |
JMSF052B15 | Sequence | 716 | 008011 (3) | pir|T00979|T00979 | 1e-63 | hypothetical protein At2g26460 [imported] - Arabidopsis thaliana>gb:AC002505_153 | 889 | 013900 (3) | pir|T00979|T00979 | 1e-77 | hypothetical protein At2g26460 [imported] - Arabidopsis thaliana>gb:AC002505_153 |
This contig is upended
. : . : . : . : . : . :
JMSF052B15+ TNTAAGACAGAGC
____________________________________________________________
consensus TNTAAGACAGAGC
. : . : . : . : . : . :
JMSF052B15+ CATCAACACCGACAGTAACCATTTCCTCGGGGACAGGACAGTCAGCTTTACTCCTGTGGA
JMSF050L18+ GGACAGGACAGTCAGCTTTACTCCTGTGGA
____________________________________________________________
consensus CATCAACACCGACAGTAACCATTTCCTCGGGGACAGGACAGTCAGCTTTACTCCTGTGGA
. : . : . : . : . : . :
JMSF052B15+ CAGTCGTGGGAATATCATTGGAAAATCCACTTTCCATGTTAAAAATAAAAGCCATCCTTC
JMSF050L18+ CAGTCGTGGGAATATCATTGGAAAATCCACTTTCCATGTTAAAAATAAAAGCCATCCTTC
____________________________________________________________
consensus CAGTCGTGGGAATATCATTGGAAAATCCACTTTCCATGTTAAAAATAAAAGCCATCCTTC
. : . : . : . : . : . :
JMSF052B15+ CAGGAAGGAACATTTCATTGGTCTTTACAACAGTCGGGGGCTTGACTATCCACTTGTAGA
JMSF050L18+ CAGGAAGGAACATTTCATTGGTCTTTACAACAGTCGGGGGCTTGACTATCCACTTGTAGA
____________________________________________________________
consensus CAGGAAGGAACATTTCATTGGTCTTTACAACAGTCGGGGGCTTGACTATCCACTTGTAGA
. : . : . : . : . : . :
JMSF052B15+ CTGACTTTGCAGTGGCAGTGCGGAAAGCAAGTGTTTGATCTTCCTTTGATGCTCTAGATT
JMSF050L18+ CTGACTTTGCAGTGGCAGTGCGGAAAGCAAGTGTTTGATCTTCCTTTGATGCTCTAGATT
____________________________________________________________
consensus CTGACTTTGCAGTGGCAGTGCGGAAAGCAAGTGTTTGATCTTCCTTTGATGCTCTAGATT
. : . : . : . : . : . :
JMSF052B15+ TTCCATCAGAATCATCTCCAACATCTGGCTTCTTATCTATTTCACTTCTCACTTTATGAA
JMSF050L18+ TTCCATCAGAATCATCTCCAACATCTGGCTTCTTATCTATTTCACTTCTCACTTTATGAA
____________________________________________________________
consensus TTCCATCAGAATCATCTCCAACATCTGGCTTCTTATCTATTTCACTTCTCACTTTATGAA
. : . : . : . : . : . :
JMSF052B15+ GCAAAGCATAATCCAATCCTTTAACCAAGTGCGTGTGCTCCACATCACCTCCAAGATACT
JMFF030F01+ AACCAAGTGCGTGTGCTCCACATCACCTCCAAGATACT
JMSF050L18+ GCAAAGCATAATCCAATCCTTTAACCAAGTGCGTGTGCTCCACATCACCTCCAAGATACT
____________________________________________________________
consensus GCAAAGCATAATCCAATCCTTTAACCAAGTGCGTGTGCTCCACATCACCTCCAAGATACT
. : . : . : . : . : . :
JMSF052B15+ TGCTCTTCTCAATAGATAACTTGTGAGCATCAGCACCGATATCCGTACCGGGAGGACGAA
JMFF030F01+ TGCTCTTCTCAATAGATAACTTGTGAGCATCAGCACCGATATCCGTACCGGGAGGACGAA
JMSF050L18+ TGCTCTTCTCAATAGATAACTTGTGAGCATCAGCACCGATATCCGTACCGGGAGGACGAA
____________________________________________________________
consensus TGCTCTTCTCAATAGATAACTTGTGAGCATCAGCACCGATATCCGTACCGGGAGGACGAA
. : . : . : . : . : . :
JMSF052B15+ CGTTATGATAGGCACCCGATTCCACGTAATCGGGATTTTGATCCTCCCTCCTCTCTTTGG
JMFF030F01+ CGTTATGATAGGCACCCGATTCCACGTAATCGGGATTTTGATCCTCCCTCCTCTCTTTGG
JMSF050L18+ CGTTATGATAGGCACCCGATTCCACGTAATCGGGATTTTGATCCTCCCTCCTCTCTTTGG
____________________________________________________________
consensus CGTTATGATAGGCACCCGATTCCACGTAATCGGGATTTTGATCCTCCCTCCTCTCTTTGG
. : . : . : . : . : . :
JMSF052B15+ CTCTGTCTCTGTACTTGGGTTGCTCTGGTTCTTCTGCTTTCTCCTCTTTGTTGCGACGAA
JMFF030F01+ CTCTGTCTCTGTACTTGGGTTGCTCTGGTTCTTCTGCTTTCTCCTCTTTGTTGCGACGAA
JMSF050L18+ CTCTGTCTCTGTACTTGGGTTGCTCTGGTTCTTCTGCTTTCTCCTCTTTGTTGCGACGAA
____________________________________________________________
consensus CTCTGTCTCTGTACTTGGGTTGCTCTGGTTCTTCTGCTTTCTCCTCTTTGTTGCGACGAA
. : . : . : . : . : . :
JMSF052B15+ TTATCTTCTCTTTGTGATTTCGCTTCGAGGCTGTCATCTTCGAAACAGTCTCGACGAATC
JMFF030F01+ TTATCTTCTCTTTGTGATTTCGCTTCGAGGCTGTCATCTTCGAAACAGTCTCGACGAATC
JMSF050L18+ TTATCTTCTCTTTGTGATTTCGCTTCGAGGCTGTCATCTTCGAAACAGTCTCGACGAATC
____________________________________________________________
consensus TTATCTTCTCTTTGTGATTTCGCTTCGAGGCTGTCATCTTCGAAACAGTCTCGACGAATC
. : . : . : . : . : . :
JMSF052B15+ ACCAGTGCGGCTGATTTCAGACGAAAAATTAAATTTACCAGATTAAATTAACCACTCTGG
JMFF030F01+ ACCAGTGCGGCTGATTTCAGACGAAAAATTAAATTTACCAGATTAAATTAACCACTCTGG
JMSF050L18+ ACCAGTGCGGCTGATTTCAGACGAAAAATTAAATTTACCAGATTAAATTAACCACTCTGG
____________________________________________________________
consensus ACCAGTGCGGCTGATTTCAGACGAAAAATTAAATTTACCAGATTAAATTAACCACTCTGG
. : . : . : . : . : . :
JMSF052B15+ ACAAAAGTTACATAGCAGAGTTCGAAGCTCGCTCGTCCGCTC
JMFF030F01+ ACAAAAGTTACATAGCAGAGTTCGAAGCTCGCTCGTCCGCTCACTGGTTCCCGAAC
JMSF050L18+ ACAAAAGTTACATAGCAGAGTTCGAAGCTCGCTCGTCCGCTCACTGGTTCCCGAACAATC
____________________________________________________________
consensus ACAAAAGTTACATAGCAGAGTTCGAAGCTCGCTCGTCCGCTCACTGGTTCCCGAACAATC