Previous Contig 007777:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018B06Sequence355007777 (3)741011999 (2)gb:AY065010_15661763e-77Arabidopsis thaliana At2g31890/F20M17.7 mRNA, complete cds.>gb:AY129492_1581143
JMSF027K21Sequence658007777 (3)gb:AY065010_15661761e-07Arabidopsis thaliana At2g31890/F20M17.7 mRNA, complete cds.>gb:AY129492_1581143 683011999 (2)gb:AY065010_15661763e-79Arabidopsis thaliana At2g31890/F20M17.7 mRNA, complete cds.>gb:AY129492_1581143
JMSF047F07Sequence609007777 (3)gb:AY065010_15661763e-09Arabidopsis thaliana At2g31890/F20M17.7 mRNA, complete cds.>gb:AY129492_1581143

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF027K21+ TCGGACTCAAAATCCAAGCCCTCCTCCA
                      ____________________________________________________________
consensus TCGGACTCAAAATCCAAGCCCTCCTCCA
 
. : . : . : . : . : . :
JMSF027K21+ TTTTGGCAAGTCGGTTAACCTTTTCAATCTTAGATTTTCGCTTACTCTTCTTTTTCTTTT
JMSF047F07+ TTTTTTTTT
                      ____________________________________________________________
consensus TTTTGGCAAGTCGGTTAACCTTTTCAATCTTAGATTTTCGCTTACTCTTCTTTTTTTTTT
 
. : . : . : . : . : . :
JMSF027K21+ TCTTACTTCCACTAACCATATTCTTTATAACAGGGGTCAATCCTCTAGTCTCAATAGACT
JMSF047F07+ TCTTACTTCCACTAACCATATTCTTTATAACAGGGGTCAATCCTCTAGTCTCAATAGACT
                      ____________________________________________________________
consensus TCTTACTTCCACTAACCATATTCTTTATAACAGGGGTCAATCCTCTAGTCTCAATAGACT
 
. : . : . : . : . : . :
JMSF027K21+ TAAGGGCAATCTTCCTAGCCTTCACACACCAATCCATGACCTCAGTGTCATGGAGCAATT
JMSF047F07+ TAAGGGCAATCTTCCTAGCCTTCACACACCAATCCATGACCTCAGTGTCATGGAGCAATT
                      ____________________________________________________________
consensus TAAGGGCAATCTTCCTAGCCTTCACACACCAATCCATGACCTCAGTGTCATGGAGCAATT
 
. : . : . : . : . : . :
JMSF027K21+ GATTTTTCCCCTTCTTGGCCAATTCTCCCACAAACTTGGCCTCCCAATCCACACTCTCAG
JMSF047F07+ GATTTTTCCCCTTCTTGGCCAATTCTCCCACAAACTTGGCCTCCCAATCCACACTCTCAG
                      ____________________________________________________________
consensus GATTTTTCCCCTTCTTGGCCAATTCTCCCACAAACTTGGCCTCCCAATCCACACTCTCAG
 
. : . : . : . : . : . :
JMSF027K21+ ATTCACCCCCGCTTACTTCACTAATTTCTTCATCTTCTTCAATTTCATCAATATCGTGAT
JMSF018B06+ TTTCATCAANATCGTGAT
JMSF047F07+ ATTCACCCCCGCTTACTTCACTAATTTCTTCATCTTCTTCAATTTCATCAATATCGTGAT
                      ____________________________________________________________
consensus ATTCACCCCCGCTTACTTCACTAATTTCTTCATCTTCTTCAATTTCATCAATATCGTGAT
 
. : . : . : . : . : . :
JMSF027K21+ TCAAACTCTTAGCACCTAAAGCATTGCACTTTCTAGATGGGTTCGTGGAGCTAGTGATAT
JMSF018B06+ TCAAACTCTTAGCACCTAAAGCATTGCACTTTCTAGATGGGTTCGTGGAGCTAGTGATAT
JMSF047F07+ TCAAACTCTTAGCACCTAAAGCATTGCACTTTCTAGATGGGTTCGTGGAGCTAGTGATAT
                      ____________________________________________________________
consensus TCAAACTCTTAGCACCTAAAGCATTGCACTTTCTAGATGGGTTCGTGGAGCTAGTGATAT
 
. : . : . : . : . : . :
JMSF027K21+ GGAAAAGGAGAGCCGAGTTGGAAGAAAGTTTGAGTCTTGGACTAGTAATAGGAAATGCAG
JMSF018B06+ GGAAAAGGAGAGCCGAGTTGGAAGAAAGTTTGAGTCTTGGACTAGTAATAGGAAATGCAG
JMSF047F07+ GGAAAAGGAGAGCCGAGTTGGAAGAAAGTTTGAGTCTTGGACTAGTAATAGGAAATGCAG
                      ____________________________________________________________
consensus GGAAAAGGAGAGCCGAGTTGGAAGAAAGTTTGAGTCTTGGACTAGTAATAGGAAATGCAG
 
. : . : . : . : . : . :
JMSF027K21+ TTTTTGGAGTCTCAAAGAAGAGATAACCTGTTGGTACGGAAAGAAGGGGCCTCTGGAAGC
JMSF018B06+ TTTTTGGAGTCTCAAAGAAGAGATAACCTGTTGGTACGGAAAGAAGGGGCCTCTGGAAGC
JMSF047F07+ TTTTTGGAGTCTCAAAGAAGAGATAACCTGTTGGTACGGAAAGAAGGGGCCTCTGGAAGC
                      ____________________________________________________________
consensus TTTTTGGAGTCTCAAAGAAGAGATAACCTGTTGGTACGGAAAGAAGGGGCCTCTGGAAGC
 
. : . : . : . : . : . :
JMSF027K21+ TTAAGAATGAGTTGAGCAACGCTGTTTCCATGGCTGCTAGCTATGCCAGATTTTTAAACC
JMSF018B06+ TTAAGAATGAGTTGAGCAACGCTGTTTCCATGGCTGCTAGCTATGCCAGATTTTTAAACC
JMSF047F07+ TTAAGAATGAGTTGAGCAACGCTGTTTCCATGGCTGCTAGCTATGCCAGATTTTTAAACC
                      ____________________________________________________________
consensus TTAAGAATGAGTTGAGCAACGCTGTTTCCATGGCTGCTAGCTATGCCAGATTTTTAAACC
 
. : . : . : . : . : . :
JMSF027K21+ CTAAATCCGTAAAACAAATGGGGGTTTTTGCGAAAATGGTAAAGAAATTAGAGACTCACC
JMSF018B06+ CTAAATCCGTAAAACAAATGGGGGTTTTTGCGAAAATGGTAAAGAAATTAGAGACTCACC
JMSF047F07+ CTAAATCCGTAAAACAAATGGGGGTTTTTGCGAAAATGGTAAAGAAATTAGAGACTCACC
                      ____________________________________________________________
consensus CTAAATCCGTAAAACAAATGGGGGTTTTTGCGAAAATGGTAAAGAAATTAGAGACTCACC
 
. : . : . : . : . : . :
JMSF027K21+ GGAATCTGCTTTGTAGAGATATGAGATT
JMSF018B06+ GGAATCTGCTTTGTAGAGATATGAGATT
JMSF047F07+ GGAATCTGCTTTGTAGAGATATGAGATTCAAAGATTGTAGTATTAGTACCAGTTTCATGG
                      ____________________________________________________________
consensus GGAATCTGCTTTGTAGAGATATGAGATTCAAAGATTGTAGTATTAGTACCAGTTTCATGG