Previous Contig 007721:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025N18Sequence616007721 (3)pir|G96690|G966903e-54unknown protein F28G11.5 [imported] - Arabidopsis thaliana>gb:AE005173_894299 Ar670013854 (3)gb:AB022071_15149463e-33Brassica rapa mRNA for S-locus protein 3, partial cds.
JMSF046G07Sequence767007721 (3)pir|G96690|G966904e-77unknown protein F28G11.5 [imported] - Arabidopsis thaliana>gb:AE005173_894299 Ar805013854 (3)pir|G96690|G966903e-65unknown protein F28G11.5 [imported] - Arabidopsis thaliana>gb:AE005173_894299 Ar
JMSF049N22Sequence611007721 (3)pir|G96690|G966903e-62unknown protein F28G11.5 [imported] - Arabidopsis thaliana>gb:AE005173_894299 Ar691013854 (3)gb:AB022071_15149461e-33Brassica rapa mRNA for S-locus protein 3, partial cds.

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046G07+ TCCAATACCTGTGTCTNGTCAAGGTTCATGTTTGTAAGGTCGTGCCC
                      ____________________________________________________________
consensus TCCAATACCTGTGTCTNGTCAAGGTTCATGTTTGTAAGGTCGTGCCC
 
. : . : . : . : . : . :
JMSF046G07+ GGACAATCCCTTATGTTTTATAAGACGAGGAATTGGCGTGAAGTAACAACCTTTTCTTTC
                      ____________________________________________________________
consensus GGACAATCCCTTATGTTTTATAAGACGAGGAATTGGCGTGAAGTAACAACCTTTTCTTTC
 
. : . : . : . : . : . :
JMSF049N22+ TATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
JMSF025N18+ TATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
JMSF046G07+ AGGCTTCTCAACTGGCCTTGAAAATTTACTATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
                      ____________________________________________________________
consensus AGGCTTCTCAACTGGCCTTGAAAATTTACTATTCTTCAGCTGCTCAGCCAAAGCTTTTTC
 
. : . : . : . : . : . :
JMSF049N22+ CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
JMSF025N18+ CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
JMSF046G07+ CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
                      ____________________________________________________________
consensus CATGGTTGTCTTAGGAATGTTGCTGATGCTATCAGGTTCAGATGAGACAGAAATTTCTCC
 
. : . : . : . : . : . :
JMSF049N22+ TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
JMSF025N18+ TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
JMSF046G07+ TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
                      ____________________________________________________________
consensus TCCTATAGGCTCTAAGCGTTCAATGATAGCCTTTGTAATATAGTTAGACAGGTGTCTCCA
 
. : . : . : . : . : . :
JMSF049N22+ ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
JMSF025N18+ ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
JMSF046G07+ ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
                      ____________________________________________________________
consensus ATCTCCATATTGATTCAGCATATAAGGGCCTAGTTGTCTGTCAAACTCCAATCTCCTCAC
 
. : . : . : . : . : . :
JMSF049N22+ AGCTTGACCATATCTCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
JMSF025N18+ AGCTTGACCATA--TCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
JMSF046G07+ AGCTTGACCATATCTCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
                      ____________________________________________________________
consensus AGCTTGACCATATCTCTCTTCATCTTCTTCAGACAATTTGACAAATTTCTCCTCGTTCTG
 
. : . : . : . : . : . :
JMSF049N22+ ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
JMSF025N18+ ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
JMSF046G07+ ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
                      ____________________________________________________________
consensus ATCCCATTTCCTAACAATTACCTCTGAATGGCCTGCAACAATGAAGAAACCAATGATTGG
 
. : . : . : . : . : . :
JMSF049N22+ TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
JMSF025N18+ TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
JMSF046G07+ TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
                      ____________________________________________________________
consensus TGAGAATGCATTGCCTTCCCTGTTAGATGAGCTATAATAAACGAAATGAACTCCAGGAGG
 
. : . : . : . : . : . :
JMSF049N22+ AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
JMSF025N18+ AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
JMSF046G07+ AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
                      ____________________________________________________________
consensus AATCATTTTGATACCCTTGAAGTTAGGCCCCGAAGAAAACATCTGAGTGTCAATGCCTAT
 
. : . : . : . : . : . :
JMSF049N22+ GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
JMSF025N18+ GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
JMSF046G07+ GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
                      ____________________________________________________________
consensus GAGTGTGGACTGAGGAACGTCGAGTAGGAGCAGTGTAGCGCCCTCCTTCACCAACTGTAA
 
. : . : . : . : . : . :
JMSF049N22+ AGCCGCGTCTGGATCCATCTTTCTTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
JMSF025N18+ AGCCGCGTCTGGATCCATCTTTATTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
JMSF046G07+ AGCCGCGTCTGGATCCATCTTTCTTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
                      ____________________________________________________________
consensus AGCCGCGTCTGGATCCATCTTTCTTCTCAAATACCTCAAAGGAACTCTTCCTCTTACAAC
 
. : . : . : . : . : . :
JMSF049N22+ TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCT
JMSF025N18+ TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCT
JMSF046G07+ TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCTGAAACACAAAATATTGCGCCC
                      ____________________________________________________________
consensus TTTACAAGCTTCTGCTTCTGCTTCTCCTTCCTCCTTTCTGAAACACAAAATATTGCGCCC