Previous Contig 007709:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048G21Sequence547007709 (7)gb:AF180390_17748214e-60Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.559010814 (7)gb:AF180390_17748213e-24Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.
JMSF006F09Sequence466007709 (7)gb:AF180390_17748212e-44Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.390022171gb:ATT5E8_15561223e-06Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project).>gb:AY08782
JMSF010E01Sequence394007709 (7)gb:AF180390_17748211e-28Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.704010814 (7)gb:AF180390_17748214e-71Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.
JMSF020J06Sequence664007709 (7)gb:AF180390_17748214e-83Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.701010814 (7)gb:AF180390_17748211e-69Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.
JMSF022M24Sequence634007709 (7)gb:AF180390_17748212e-78Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.722010814 (7)gb:AF180390_17748211e-87Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.
JMSF040H14Sequence660007709 (7)gb:AF180390_17748216e-68Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.770010814 (7)gb:AF180390_17748216e-84Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.
JMSF046C04Sequence777007709 (7)gb:AF180390_17748212e-78Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.745010814 (7)gb:AF180390_17748211e-86Arabidopsis thaliana non-phototropic hypocotyl 3 (NPH3) mRNA, complete cds.

Alignment

This contig is upended


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JMSF020J06+ CACTGCACNTCCTCACAATCTGGA
                      ____________________________________________________________
consensus CACTGCACNTCCTCACAATCTGGA
 
. : . : . : . : . : . :
JMSF022M24+ CTCCGCCCATGGGGATAGCTTTTCGCAGCTTTTTAGCACCACTATGGAGTCCCTCC
JMSF020J06+ GATTCTCCGCCCATGGGGATAGCTTTTCGCAGCTTTTTAGCACCACTATGGAGTCCCTCC
JMSF040H14+ TCC
JMSF046C04+ CTCCGCCCATGGGGATAGCTTTTCGCAGCTTTTTAGCACCACTATGGAGTCCCTCC
                      ____________________________________________________________
consensus GATTCTCCGCCCATGGGGATAGCTTTTCGCAGCTTTTTAGCACCACTATGGAGTCCCTCC
 
. : . : . : . : . : . :
JMSF022M24+ ATGATGACAAGACTACATAGCTGAGAAAAGCTTCAGTCTTGAATATCAGGTTGCCTTCTT
JMFF048G21+ TTCAGTCTGGAATATCAGGTGGCCTTCTT
JMSF020J06+ ATGATGACAAGACTACATAGCTGAGAAAAGCTTCAGTCTTGAATATCAGGTTGCCTTCTT
JMSF040H14+ ATGATGACAAGACTACATAGCTGAGAAAAGCTTCAGTCTTGAATATCAGGTTGCCTTCTT
JMSF046C04+ ATGATGACAAGACTACATAGCTGAGAAAAGCTTCAGTCTTGAATATCAGGTTGCCTTCTT
                      ____________________________________________________________
consensus ATGATGACAAGACTACATAGCTGAGAAAAGCTTCAGTCTTGAATATCAGGTTGCCTTCTT
 
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JMSF022M24+ CCAAATCCTCTGTCATTTCAAGATACTCCGCTGCACATCTTAAGCCGGATATATTAGTCG
JMFF048G21+ CCAAATCCTCTGTCATTTCAAGATACTCCGCTGCACATCTTAAGCCGGATATATTAGTCG
JMSF006F09+ TTAGTCG
JMSF020J06+ CCAAATCCTCTGTCATTTCAAGATACTCCGCTGCACATCTTAAGCCGGATATATTAGTCG
JMSF040H14+ CCAAATCCTCTGTCATTTCAAGATACTCCGCTGCACATCTTAAGCCGGATATATTAGTCG
JMSF046C04+ CCAAATCCTCTGTCATTTCAAGATACTCCGCTGCACATCTTAAGCCGGATATATTAGTCG
                      ____________________________________________________________
consensus CCAAATCCTCTGTCATTTCAAGATACTCCGCTGCACATCTTAAGCCGGATATATTAGTCG
 
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JMSF022M24+ CTGTTAGATCAACAGCGATTCCATAGCAGAACTTTGCAGCTAGCTCAAAGGCCTCAGGCC
JMFF048G21+ CTGTTAGATCAACAGCGATTCCATAGCAGAACTTTGCAGCTAGCTCAAAGGCCTCAGGCC
JMSF006F09+ CTGTTAGATCAACAGCGATTCCATAGCAGAACTTTGCAGCTAGCTCAAAGGCNTCAGGCC
JMSF020J06+ CTGTTAGATCAACAGCGATTCCATAGCAGAACTTTGCAGCTAGCTCAAAGGCCTCAGGCC
JMSF040H14+ CTGTTAGATCAACAGCGATTCCATAGCAGAACTTTGCAGCTAGCTCAAAGGCCTCAGGCC
JMSF046C04+ CTGTTAGATCAACAGCGATTCCATAGCAGAACTTTGCAGCTAGCTCAAAGGCCTCAGGCC
                      ____________________________________________________________
consensus CTGTTAGATCAACAGCGATTCCATAGCAGAACTTTGCAGCTAGCTCAAAGGCCTCAGGCC
 
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JMSF022M24+ CCCCAGGAAGATCATCTAGGACTATCTTGCTCAAATCTGCTTCCCTCGATTCGTATATAA
JMFF048G21+ CCCCAGGAAGATCATCTAGGACTATCTTGCTCAAATCTGCTTCCCTCGATTCGTATATAA
JMSF006F09+ CCCCAGGAAGATCATCTAGGACTATCTTGCTCAAATCTGCTTCCCTCGATTCGTATATAA
JMSF020J06+ CCCCAGGAAGATCATCTAGGACTATCTTGCTCAAATCTGCTTCCCTCGATTCGTATATAA
JMSF010E01+ TTCCCTCGATTCGTATATAA
JMSF040H14+ CCCCAGGAAGATCATCTAGGACTATCTTGCTCAAATCTGCTTCCCTCGATTCGTATATAA
JMSF046C04+ CCCCAGGAAGATCATCTAGGACTATCTTGCTCAAATCTGCTTCCCTCGATTCGTATATAA
                      ____________________________________________________________
consensus CCCCAGGAAGATCATCTAGGACTATCTTGCTCAAATCTGCTTCCCTCGATTCGTATATAA
 
. : . : . : . : . : . :
JMSF022M24+ CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
JMFF048G21+ CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
JMSF006F09+ CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
JMSF020J06+ CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
JMSF010E01+ CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
JMSF040H14+ CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
JMSF046C04+ CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
                      ____________________________________________________________
consensus CTCTGTTCATCTTTCCACTCCTCGAAAGCAGTGGATACTTGTGTAAATGGAAATTAGCAT
 
. : . : . : . : . : . :
JMSF022M24+ CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
JMFF048G21+ CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
JMSF006F09+ CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
JMSF020J06+ CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
JMSF010E01+ CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
JMSF040H14+ CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
JMSF046C04+ CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
                      ____________________________________________________________
consensus CTCCAATTTGGACCAACAAGTCACTTGGGATATCAGTTGCAACATACCAAGATTGACCTC
 
. : . : . : . : . : . :
JMSF022M24+ TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
JMFF048G21+ TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
JMSF006F09+ TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
JMSF020J06+ TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
JMSF010E01+ TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
JMSF040H14+ TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
JMSF046C04+ TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
                      ____________________________________________________________
consensus TTTGCTCAAAACCATCAGTCTTGACACCGGGCTTGGTTGCAGTGACGACTCCATTGCCAT
 
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JMSF022M24+ AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACATGGCGAGAAACACGAAAAAAG
JMFF048G21+ AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACACGGCGAGAAACACGAAAAAAG
JMSF006F09+ AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACATGGCGAGAAACACGAAAAAAG
JMSF020J06+ AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACATGGCGAGAAACACGAAAAAAG
JMSF010E01+ AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACATGGCGAGAAACACGAAAAAAG
JMSF040H14+ AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACATGGCGAGAAACACGAAAAAAG
JMSF046C04+ AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACATGGCGAGAAACACGAAAAAAG
                      ____________________________________________________________
consensus AGTCTCGGCCACTGACAGACTCACTCTCTGACTCCCACATGGCGAGAAACACGAAAAAAG
 
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JMSF022M24+ TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
JMFF048G21+ TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
JMSF006F09+ TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
JMSF020J06+ TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
JMSF010E01+ TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
JMSF040H14+ TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
JMSF046C04+ TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
                      ____________________________________________________________
consensus TAGAGCAGAAATCTCCCAAGAAAGCGGGCACTATTTAGCTCATTCAGAGAGAAAGAACAC
 
. : . : . : . : . : . :
JMSF022M24+ AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATAGC
JMFF048G21+ AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATA
JMSF006F09+ AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATAGC
JMSF020J06+ AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATAGCT
JMSF010E01+ AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATAGCTGAGAAGCAGGCAAGCAAGAGTG
JMSF040H14+ AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATAGCTGAGAAGCAGGCAAGCAAGAGTG
JMSF046C04+ AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATAGCTGAGAAGCAGGCAAGCAAGAGTG
                      ____________________________________________________________
consensus AAGTTGAGATAAAGGGGAGCAGAAGAAGAAGCATAGCTGAGAAGCAGGCAAGCAAGAGTG
 
. : . : . : . : . : . :
JMSF010E01+ ATGAGTTAAAAAG
JMSF040H14+ ATGAGTTAAAAAGGAAGAATCCCACATGGGGATGCTTGCAATTATCTCTAAATGTC
JMSF046C04+ ATGAGTTAAAAAGGAAGAATCCCACATGGGGATGCTTGCAATTATCTCTAAATGTCGGCT
                      ____________________________________________________________
consensus ATGAGTTAAAAAGGAAGAATCCCACATGGGGATGCTTGCAATTATCTCTAAATGTCGGCT
 
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JMSF046C04+ TCTCACTTGATTTTTGAGGCTTCTTACAGGCTGTGAAGTCATGGGCAGACACTCCAACGC
                      ____________________________________________________________
consensus TCTCACTTGATTTTTGAGGCTTCTTACAGGCTGTGAAGTCATGGGCAGACACTCCAACGC