Previous Contig 007694:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010L15Sequence658007694 (6)gb:AE005173_8932732e-63Arabidopsis thaliana chromosome 1, bottom arm complete sequence.>gb:AC024260_153720008663 (5)pir|F96577|F965771e-62hypothetical protein F22G10.3 [imported] - Arabidopsis thaliana>gb:AE005173_8932
JMFF010O24Sequence526007694 (6)gb:AB022220_15151448e-39Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLN21.>gb:AY518292_161766008663 (5)pir|F96577|F965772e-69hypothetical protein F22G10.3 [imported] - Arabidopsis thaliana>gb:AE005173_8932
JMFF024J17Sequence529007694 (6)gb:AB022220_15151442e-48Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLN21.>gb:AY518292_161720008663 (5)pir|F96577|F965773e-62hypothetical protein F22G10.3 [imported] - Arabidopsis thaliana>gb:AE005173_8932
JMFS077E09Sequence640007694 (6)gb:AE005173_8932732e-60Arabidopsis thaliana chromosome 1, bottom arm complete sequence.>gb:AC024260_153
JMSF043H19Sequence790007694 (6)gb:AB022220_15151442e-76Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLN21.>gb:AY518292_161670008663 (5)pir|F96577|F965772e-59hypothetical protein F22G10.3 [imported] - Arabidopsis thaliana>gb:AE005173_8932
JMSF045O23Sequence754007694 (6)gb:AB022220_15151441e-65Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLN21.>gb:AY518292_161674008663 (5)pir|F96577|F965775e-66hypothetical protein F22G10.3 [imported] - Arabidopsis thaliana>gb:AE005173_8932

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043H19+ CCCGA
                      ____________________________________________________________
consensus CCCGA
 
. : . : . : . : . : . :
JMSF043H19+ GTTCCATGAATTACCACCCGTTTGTAAACTGTTTATGCCTTGCAACTGTGGAGGGATCCA
                      ____________________________________________________________
consensus GTTCCATGAATTACCACCCGTTTGTAAACTGTTTATGCCTTGCAACTGTGGAGGGATCCA
 
. : . : . : . : . : . :
JMSF043H19+ TCCCGTAAAATGGTTGTTCTCGACATTTAGATTATCGAGGGGAAGATTTGCAAGAACATC
JMFF010L15+ GAAGATTTGCAAGAACATC
JMSF045O23+ TTAGATTATCGAGGGGAAGATTTGCAAGAACATC
                      ____________________________________________________________
consensus TCCCGTAAAATGGTTGTTCTCGACATTTAGATTATCGAGGGGAAGATTTGCAAGAACATC
 
. : . : . : . : . : . :
JMSF043H19+ AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
JMFF010L15+ AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
JMFS077E09+ ATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
JMSF045O23+ AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
                      ____________________________________________________________
consensus AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
 
. : . : . : . : . : . :
JMSF043H19+ GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
JMFF024J17+ TCGACAGGTT
JMFF010L15+ GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
JMFS077E09+ GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
JMSF045O23+ GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
                      ____________________________________________________________
consensus GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
 
. : . : . : . : . : . :
JMSF043H19+ CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFF024J17+ CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFF010L15+ CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFS077E09+ CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFF010O24+ A
JMSF045O23+ CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
                      ____________________________________________________________
consensus CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
 
. : . : . : . : . : . :
JMSF043H19+ ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFF024J17+ ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFF010L15+ ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFS077E09+ ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFF010O24+ ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMSF045O23+ ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
                      ____________________________________________________________
consensus ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
 
. : . : . : . : . : . :
JMSF043H19+ AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFF024J17+ AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFF010L15+ AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFS077E09+ AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFF010O24+ AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMSF045O23+ AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
                      ____________________________________________________________
consensus AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
 
. : . : . : . : . : . :
JMSF043H19+ GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFF024J17+ GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFF010L15+ GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFS077E09+ GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFF010O24+ GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMSF045O23+ GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
                      ____________________________________________________________
consensus GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
 
. : . : . : . : . : . :
JMSF043H19+ CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFF024J17+ CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFF010L15+ CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFS077E09+ CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFF010O24+ CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMSF045O23+ CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
                      ____________________________________________________________
consensus CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
 
. : . : . : . : . : . :
JMSF043H19+ GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFF024J17+ GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFF010L15+ GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFS077E09+ GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFF010O24+ GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMSF045O23+ GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
                      ____________________________________________________________
consensus GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
 
. : . : . : . : . : . :
JMSF043H19+ TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFF024J17+ TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFF010L15+ TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFS077E09+ TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFF010O24+ TGGTGAGTTCAGGCTGGAGA--AACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMSF045O23+ TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
                      ____________________________________________________________
consensus TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
 
. : . : . : . : . : . :
JMSF043H19+ AGCGACGGCGGAGGGCGGCGCGTTGAGCAAAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFF024J17+ AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFF010L15+ AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFS077E09+ AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFF010O24+ AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMSF045O23+ AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
                      ____________________________________________________________
consensus AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
 
. : . : . : . : . : . :
JMSF043H19+ CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAA
JMFF024J17+ CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTC
JMFF010L15+ CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTC
JMFS077E09+ CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGC
JMFF010O24+ CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAA
JMSF045O23+ CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAACTAGG
                      ____________________________________________________________
consensus CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAACTAGG
 
. : . : . : . : . : . :
JMSF045O23+ GAACAAAAGGGCCTTGTCAGAGCTTCCAACTTTTGTTAAATACTATTTATTGTTAACCCT
                      ____________________________________________________________
consensus GAACAAAAGGGCCTTGTCAGAGCTTCCAACTTTTGTTAAATACTATTTATTGTTAACCCT