Previous Contig 007561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS002H12Sequence504007561 (5)sp|Q8L4F8|RPO3_NICSY8e-20DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (T7 bacterioph
JMFS046C08Sequence636007561 (5)sp|Q8L4F8|RPO3_NICSY2e-57DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (T7 bacterioph
JMFS135D03Sequence640007561 (5)sp|Q8L4F8|RPO3_NICSY1e-37DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (T7 bacterioph
JMSF030F16Sequence689007561 (5)sp|Q8L4F8|RPO3_NICSY1e-69DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (T7 bacterioph773012711 (2)gb:NTA416575_16914002e-39Nicotiana tabacum partial nictaRpoT3-tom gene for plastid RNA polymerase, exons
JMSF043I23Sequence730007561 (5)sp|Q8L4F8|RPO3_NICSY1e-43DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (T7 bacterioph717012711 (2)gb:NTA416571_16913962e-31Nicotiana tabacum partial nictaRpoT1-tom gene for mitochondrial RNA polymerase,

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF030F16+ CTATCAGCTGACTGATTGATTGTAGGTTGCACATAAGCTGTTTCCGTTA
                      ____________________________________________________________
consensus CTATCAGCTGACTGATTGATTGTAGGTTGCACATAAGCTGTTTCCGTTA
 
. : . : . : . : . : . :
JMSF030F16+ ATAATTCTATAAGACGGCATCCCAACTTAGCCCTTATTTCTTGACCCCAAGGCTCAAATT
                      ____________________________________________________________
consensus ATAATTCTATAAGACGGCATCCCAACTTAGCCCTTATTTCTTGACCCCAAGGCTCAAATT
 
. : . : . : . : . : . :
JMSF030F16+ CTTCGTTTTTCAACAATTTTTGCACTTGAACTAGTCTGTTCTTTTTAATCAGCCATTGTA
                      ____________________________________________________________
consensus CTTCGTTTTTCAACAATTTTTGCACTTGAACTAGTCTGTTCTTTTTAATCAGCCATTGTA
 
. : . : . : . : . : . :
JMSF030F16+ TCCGCTTTCTTAACCATATTGGATCCCTGCTTAAATCCTCTTGCTTTGGTGTTTCATTTG
JMFS046C08+ GTTTCATTTG
                      ____________________________________________________________
consensus TCCGCTTTCTTAACCATATTGGATCCCTGCTTAAATCCTCTTGCTTTGGTGTTTCATTTG
 
. : . : . : . : . : . :
JMSF030F16+ TTTGACTCTTGAGTTGCTTCGTTTTCTCCAAGAAACTATGAATTCTAACTTCATTCTCAA
JMFS046C08+ TTTGACTCTTGAGTTGCTTCGTTTTCTCCAAGAAACTATGAATTCTAACTTCATTCTCAA
                      ____________________________________________________________
consensus TTTGACTCTTGAGTTGCTTCGTTTTCTCCAAGAAACTATGAATTCTAACTTCATTCTCAA
 
. : . : . : . : . : . :
JMSF030F16+ TTGCAGTGCCAATCTGCAATGCAGCTTGGAGTACTTGAACATACTTATTCTCGTTGCCAC
JMFS046C08+ TTGCAGTGCCAATCTGCAATGCAGCTTGGAGTACTTGAACATACTTATTCTCGTTGCCAC
JMSF043I23+ TCGTTGCCAC
                      ____________________________________________________________
consensus TTGCAGTGCCAATCTGCAATGCAGCTTGGAGTACTTGAACATACTTATTCTCGTTGCCAC
 
. : . : . : . : . : . :
JMSF030F16+ ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
JMFS046C08+ ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
JMSF043I23+ ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
                      ____________________________________________________________
consensus ACATCATCATCAACCCCATCATCTGATGCATCACAATGACGGACATTTTATCAGCCGGCA
 
. : . : . : . : . : . :
JMSF030F16+ AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
JMFS046C08+ AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
JMFS135D03+ GTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
JMSF043I23+ AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
                      ____________________________________________________________
consensus AAGAGTCAATGTAAGGCGAGTAAGCAGCCCTGTTCTTCTTAGTCCTCTGAGTCTTCTGCT
 
. : . : . : . : . : . :
JMSF030F16+ CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
JMFS046C08+ CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
JMFS135D03+ CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
JMSF043I23+ CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
                      ____________________________________________________________
consensus CCTTCTCTATGGCATCTCTCAGGGGCTCAAACCACCCGAGGAAGAGTTTCTTCACATAAG
 
. : . : . : . : . : . :
JMSF030F16+ GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMFS046C08+ GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMFS002H12+ TGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMFS135D03+ GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
JMSF043I23+ GAAGGTTTGGCGCCAATTTCTCCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
                      ____________________________________________________________
consensus GAAGGTTTGGCGCCAATTTCTTCTCACACATTTCTCTATGAAGCTCTCTGTACTCCTCAA
 
. : . : . : . : . : . :
JMSF030F16+ CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMFS046C08+ CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMFS002H12+ CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMFS135D03+ CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
JMSF043I23+ CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
                      ____________________________________________________________
consensus CCTCCTTCTCCCATGCCTCAGTCTCCGCCTTCACCTGCCTCCTCTTCAACAAACGGTACT
 
. : . : . : . : . : . :
JMSF030F16+ TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCG
JMFS046C08+ TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
JMFS002H12+ TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
JMFS135D03+ TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
JMSF043I23+ TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
                      ____________________________________________________________
consensus TGTTCCTGTTGGTCTCGCGAATCCTCAGCTTGGCCCGTTCGATCTCCCTAGCCCTAACGA
 
. : . : . : . : . : . :
JMFS046C08+ ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
JMFS002H12+ ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
JMFS135D03+ ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
JMSF043I23+ ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
                      ____________________________________________________________
consensus ACAAATTGTTGCTCAAGAAAAGAGAAGAAATCCAAGGTGGGTCTTGCACGAAAACTCTCC
 
. : . : . : . : . : . :
JMFS046C08+ TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
JMFS002H12+ TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
JMFS135D03+ TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
JMSF043I23+ TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
                      ____________________________________________________________
consensus TGGTCGACTCCTCGGGCAAAATCGCGAGTGAGCCATTGGAGATTTTATGCGAATTTGATA
 
. : . : . : . : . : . :
JMFS046C08+ TATCCTCCTGGGTTTGAGTCAATATC
JMFS002H12+ TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
JMFS135D03+ TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
JMSF043I23+ TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
                      ____________________________________________________________
consensus TATCCTCCTGGGTTTGAGTCAATATCTCGTCTTTAGAAACTGAAACGGCGTACAAAACAA
 
. : . : . : . : . : . :
JMFS002H12+ GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
JMFS135D03+ GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
JMSF043I23+ GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
                      ____________________________________________________________
consensus GAGGCTTTGCCCGTTTGAGAGTGTGAATCTTCAAAAGTTGTGGGCTTTGCGACACAGCGA
 
. : . : . : . : . : . :
JMFS002H12+ GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
JMFS135D03+ GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
JMSF043I23+ GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
                      ____________________________________________________________
consensus GTGGTTCAGTGGTTTCTGGTTTAGGATTGGCACGGGGGTTTTGGGGTAGTCTCCGTGTAG
 
. : . : . : . : . : . :
JMFS002H12+ CGGAGAAGTGAGGTATTGAGTAGAGAGAATA
JMFS135D03+ CGGAGAAGTGAGGTATTGAGTAGAGAGAATAGGCTGTGGAAGCCATGGAA
JMSF043I23+ CGGAGAAGTGAGGTATTGAGTAGAGAGAATAGGCTGTGGAAGCCATGGAATAGAAGCCCC
                      ____________________________________________________________
consensus CGGAGAAGTGAGGTATTGAGTAGAGAGAATAGGCTGTGGAAGCCATGGAATAGAAGCCCC