Previous Contig 007516:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007E16Sequence655007516 (3)gb:AY039987_15604911e-32Arabidopsis thaliana putative transcription factor IIA large subunit (At1g07470)780008489 (3)gb:AY039987_15604916e-37Arabidopsis thaliana putative transcription factor IIA large subunit (At1g07470)
JMSF036O24Sequence220007516 (3)570008489 (3)gb:AY039987_15604918e-20Arabidopsis thaliana putative transcription factor IIA large subunit (At1g07470)
JMSF042N12Sequence794007516 (3)gb:AY039987_15604911e-32Arabidopsis thaliana putative transcription factor IIA large subunit (At1g07470)735008489 (3)gb:AY039987_15604915e-35Arabidopsis thaliana putative transcription factor IIA large subunit (At1g07470)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042N12+ GGTTGCATATAAGGG
                      ____________________________________________________________
consensus GGTTGCATATAAGGG
 
. : . : . : . : . : . :
JMSF042N12+ CTAGGCCTCCCTTGAGCAGGTTTAACATCGGGGACATCATTNTCATTCACAGAAGAGTAT
                      ____________________________________________________________
consensus CTAGGCCTCCCTTGAGCAGGTTTAACATCGGGGACATCATTNTCATTCACAGAAGAGTAT
 
. : . : . : . : . : . :
JMSF042N12+ TCATTGGGGGTGATNGGAGTGCCACCAGTAGCAATATTATACAAAGAACTATCTGCTGGT
                      ____________________________________________________________
consensus TCATTGGGGGTGATNGGAGTGCCACCAGTAGCAATATTATACAAAGAACTATCTGCTGGT
 
. : . : . : . : . : . :
JMFF007E16+ TGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGGG
JMSF042N12+ GTCTGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGGG
                      ____________________________________________________________
consensus GTCTGAGCAGTTCCAGGTAATGGAGTTTGAGCTGTTCCTGGCAATGGTGTAGGGGCCGGG
 
. : . : . : . : . : . :
JMFF007E16+ GTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGGT
JMSF042N12+ GTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGGT
                      ____________________________________________________________
consensus GTTGGTAAAGGAGTCGGAGGAAAAAGCAAATCAACAGTGGGAGTGTGAGCTGTTCCAGGT
 
. : . : . : . : . : . :
JMFF007E16+ AGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGGA
JMSF042N12+ AGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGGA
                      ____________________________________________________________
consensus AGTGGTGTCTGAGCTGTTCCAGGCATAGGTGTTGGGGCTGGGGTGGGTAAAGGAGTCGGA
 
. : . : . : . : . : . :
JMFF007E16+ GGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATTA
JMSF042N12+ GGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATTA
                      ____________________________________________________________
consensus GGAAACAGTAAATCAGCAGTGGGAGTTTCGTACTCCTCACTGCCTTCGTAGGGTACATTA
 
. : . : . : . : . : . :
JMFF007E16+ AGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTCA
JMSF042N12+ AGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTCA
                      ____________________________________________________________
consensus AGGTCATGCACAGGGGTGATTGGACCGCCGGGTACCACTTTCGGAGCGGAGTTCCTCTCA
 
. : . : . : . : . : . :
JMFF007E16+ ATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTCG
JMSF042N12+ ATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTCG
                      ____________________________________________________________
consensus ATCGGACCCAATATAGCCCCAGCTTGCATCATTTTCATCTCCCATATTCCTTGGAGCTCG
 
. : . : . : . : . : . :
JMFF007E16+ TTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGATG
JMSF042N12+ TTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGATG
                      ____________________________________________________________
consensus TTGAGGACGCTTTCTCCGGGACCACCATTGTTGATGAACTCTTCGCGGACCTTATTGATG
 
. : . : . : . : . : . :
JMSF036O24+ GGATGTAAACATTNNTGNTATTATTACTAGCCATATCTCANCAC
JMFF007E16+ ACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCAC
JMSF042N12+ ACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCAC
                      ____________________________________________________________
consensus ACGTCCTCGATAACGTGGATGTAAACATTGCTGGTATTATTACTAGCCATATCTCAGCAC
 
. : . : . : . : . : . :
JMSF036O24+ CTCAAATCCTNGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGTC
JMFF007E16+ CTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGTC
JMSF042N12+ CTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGTC
                      ____________________________________________________________
consensus CTCAAATCCTCGGAAAAATCGGGAAGAAAGCAGCAATTAGGAGAATCGAACACTGGAGTC
 
. : . : . : . : . : . :
JMSF036O24+ CCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGNAG
JMFF007E16+ CCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGAG
JMSF042N12+ CCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGAG
                      ____________________________________________________________
consensus CCGAGATGCGGGGGTTAAGGTGGCCTGCAGGTTGGAGCGACGGCGGTGAACGCGGAGGAG
 
. : . : . : . : . : . :
JMSF036O24+ GAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAGAACAGGGGGCG
JMFF007E16+ GAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAG-ACAGGGGGCG
JMSF042N12+ GAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAG-ACAGGGGGCGGAACG
                      ____________________________________________________________
consensus GAGACGGAGGAGGGAGGAAGGGGGCGACGAAATGGGAAGAAGAG-ACAGGGGGCGGAACG