| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS025B10 | Sequence | 616 | 007443 (10) | gb:AP003683_1831960 | 3e-66 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P043 | |||||
| JMFS081B10 | Sequence | 623 | 007443 (10) | gb:AY091780_1574739 | 5e-56 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | |||||
| JMFS081C01 | Sequence | 625 | 007443 (10) | gb:AY091780_1574739 | 4e-53 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | |||||
| JMFS081G03 | Sequence | 624 | 007443 (10) | gb:AY091780_1574739 | 4e-53 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | |||||
| JMFS096D05 | Sequence | 621 | 007443 (10) | gb:AY091780_1574739 | 5e-53 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | |||||
| JMFS111B06 | Sequence | 624 | 007443 (10) | gb:AY091780_1574739 | 6e-54 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | |||||
| JMFS117C04 | Sequence | 624 | 007443 (10) | gb:AY091780_1574739 | 5e-59 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | |||||
| JMFS128F05 | Sequence | 612 | 007443 (10) | gb:AP003683_1831960 | 5e-71 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P043 | |||||
| JMSF025L18 | Sequence | 669 | 007443 (10) | gb:AY091780_1574739 | 1e-55 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | 739 | 004021 (3) | gb:AY091780_1574739 | 2e-86 | Arabidopsis thaliana At3g54435 mRNA, complete cds. |
| JMSF041M12 | Sequence | 786 | 007443 (10) | gb:AY091780_1574739 | 1e-65 | Arabidopsis thaliana At3g54435 mRNA, complete cds. | 630 | 004021 (3) | gb:AY091780_1574739 | 3e-76 | Arabidopsis thaliana At3g54435 mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
JMFS025B10+ TGCCCATTAACAAGCAGCTCTTTTGGTGCTTTAGA
____________________________________________________________
consensus TGCCCATTAACAAGCAGCTCTTTTGGTGCTTTAGA
. : . : . : . : . : . :
JMFS025B10+ TATTTGCCGTATGCCAACTTGACATGATTCACAATCAATGATATGTCCTGAAGCATCTTT
____________________________________________________________
consensus TATTTGCCGTATGCCAACTTGACATGATTCACAATCAATGATATGTCCTGAAGCATCTTT
. : . : . : . : . : . :
JMFS025B10+ AATGGTGATAACAAGAGTATAAAGGTTGGGCTGCTCTGCAGACCAGAGCTTTGGCGCTTG
JMFS128F05+ AGCTTTGGCGCTTG
____________________________________________________________
consensus AATGGTGATAACAAGAGTATAAAGGTTGGGCTGCTCTGCAGACCAGAGCTTTGGCGCTTG
. : . : . : . : . : . :
JMFS025B10+ CACTTTCCCCACAAGAGAATACCCTTTAAATCCTAAATAGTAATCACTTTTGGAAGTAAA
JMFS128F05+ CACTTTCCCCACAAGAGAATACCCTTTAAATCCTAAATAGTAATCACTTTTGGAAGTAAA
____________________________________________________________
consensus CACTTTCCCCACAAGAGAATACCCTTTAAATCCTAAATAGTAATCACTTTTGGAAGTAAA
. : . : . : . : . : . :
JMFS025B10+ TTGTAAAGGAGTTGCATCTGCAGAAAGCAGATCACTGTCTTTCGCTTTATCGCACAAACT
JMFS128F05+ TTGTAAAGGAGTTGCATCTGCAGAAAGCAGATCACTGTCTTTCGCTTTATCGCACAAACT
____________________________________________________________
consensus TTGTAAAGGAGTTGCATCTGCAGAAAGCAGATCACTGTCTTTCGCTTTATCGCACAAACT
. : . : . : . : . : . :
JMFS025B10+ TCCATTTTCATATATTGCAGCTTCAACAGTGAAGTCAGAAAGACTTAGATCGGCATATGA
JMFS128F05+ TCCATTTTCATATATTGCAGCTTCAACAGTGAAGTCAGAAAGACTTAGATCGGCATATGA
____________________________________________________________
consensus TCCATTTTCATATATTGCAGCTTCAACAGTGAAGTCAGAAAGACTTAGATCGGCATATGA
. : . : . : . : . : . :
JMFS025B10+ GTTATCAATTTCCACTTCAACCTCTATATCTGCATAAGAAAAATCTTCTGTCAAGTTTGA
JMFS128F05+ GTTATCAATTTCCACTTCAACCTCTATATCTGCATAAGAAAAATCTTCTGTCAAGTTTGA
____________________________________________________________
consensus GTTATCAATTTCCACTTCAACCTCTATATCTGCATAAGAAAAATCTTCTGTCAAGTTTGA
. : . : . : . : . : . :
JMFS025B10+ CTTAAAAAAATAGTCAGCAATAAATATCTTTGGCTTTGAAATAAGATGCACATCACGATG
JMFS128F05+ CTTAAAAAAATAGTCAGCAATAAATATCTTTGGCTTTGAAATAAGATGCACATCACGATG
____________________________________________________________
consensus CTTAAAAAAATAGTCAGCAATAAATATCTTTGGCTTTGAAATAAGATGCACATCACGATG
. : . : . : . : . : . :
JMFS025B10+ AATGCCAGACAACCACCAGTGATCTTGATCTTCAAGGTAAGACCCATCACTCCATCGCAT
JMFS128F05+ AATGCCAGACAACCACCAGTGATCTTGATCTTCAAGGTAAGACCCATCACTCCATCGCAT
____________________________________________________________
consensus AATGCCAGACAACCACCAGTGATCTTGATCTTCAAGGTAAGACCCATCACTCCATCGCAT
. : . : . : . : . : . :
JMFS025B10+ TACTTGAACAGCTAGACAATTGCAGTTATCAGACCCACAGGGTTTACAAAAACTGGTTAT
JMFS128F05+ TACTTGAACAGCTAGACAATTGCAGTTATCAGACCCACAGGGTTTACAAAAACTGGTTAT
____________________________________________________________
consensus TACTTGAACAGCTAGACAATTGCAGTTATCAGACCCACAGGGTTTACAAAAACTGGTTAT
. : . : . : . : . : . :
JMFS025B10+ CTCAAATTCCGCAGGTAATCTACTGTCCTGGCTATATCCAA
JMFS128F05+ CTCAAATTCCGCAGGTAATCTACTGTCCTGGCTATATCCAACAGGAACCCCATTTACCCA
____________________________________________________________
consensus CTCAAATTCCGCAGGTAATCTACTGTCCTGGCTATATCCAACAGGAACCCCATTTACCCA
. : . : . : . : . : . :
JMFS128F05+ GGTATAGAACGCGGAATCCACAGCTTCAAAATGTAGAAATATCCTGCGTCCTTCCCATTC
JMSF041M12+ CCATTC
____________________________________________________________
consensus GGTATAGAACGCGGAATCCACAGCTTCAAAATGTAGAAATATCCTGCGTCCTTCCCATTC
. : . : . : . : . : . :
JMFS128F05+ TTTAGGAAGGAAAAACAAAGTCCTGTAACAGCCAGTGGGATTCTCATCAGGAACTTTG
JMFS111B06+ G
JMSF025L18+ CAGGAACTTTGGG
JMFS081B10+ CAGGAACTTTGGG
JMFS117C04+ AGCCAGTGGGATTCTCATCAGGAACTTTGGG
JMSF041M12+ TTTAGGAAGGAAAAACAAAGTCCTGTAACAGCCAGTGGGATTCTCATCAGGAACTTTGGG
____________________________________________________________
consensus TTTAGGAAGGAAAAACAAAGTCCTGTAACAGCCAGTGGGATTCTCATCAGGAACTTTGGG
. : . : . : . : . : . :
JMFS081G03+ GATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
JMFS081C01+ GATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
JMFS111B06+ CGGATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
JMSF025L18+ CGGATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
JMFS096D05+ AAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
JMFS081B10+ CGGATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
JMFS117C04+ CGGATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
JMSF041M12+ CGGATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
____________________________________________________________
consensus CGGATCAAAATGAAAGGGATATTTAACATTAGTATAAATTGGTGTGTCATGTCCATGACA
. : . : . : . : . : . :
JMFS081G03+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
JMFS081C01+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
JMFS111B06+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
JMSF025L18+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
JMFS096D05+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
JMFS081B10+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
JMFS117C04+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
JMSF041M12+ CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
____________________________________________________________
consensus CTGCCAATTGGAAGGAACTGGAATTTTGGTCCAAGTAGAGTCCTGAAAAGAGGTATCATA
. : . : . : . : . : . :
JMFS081G03+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
JMFS081C01+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
JMFS111B06+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
JMSF025L18+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
JMFS096D05+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
JMFS081B10+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
JMFS117C04+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
JMSF041M12+ AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
____________________________________________________________
consensus AAAATTTGAAGGAACAGCGGGAGGACTAGGAGCCAGGAAGAAATTCCAATAGCCTGACAA
. : . : . : . : . : . :
JMFS081G03+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
JMFS081C01+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
JMFS111B06+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
JMSF025L18+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
JMFS096D05+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
JMFS081B10+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
JMFS117C04+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
JMSF041M12+ AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
____________________________________________________________
consensus AGACTTGACAAAAGGCAAACCTTCCACCCACCGAGCAGCACAATCAAGCGCCTCAGGAAC
. : . : . : . : . : . :
JMFS081G03+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
JMFS081C01+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
JMFS111B06+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
JMSF025L18+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
JMFS096D05+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
JMFS081B10+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
JMFS117C04+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTTTTG
JMSF041M12+ AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
____________________________________________________________
consensus AGCATCGTCGTCCCAAACTGCAGAATTAGCCACCACAACATCCGCCTTGTTCCGCTCACG
. : . : . : . : . : . :
JMFS081G03+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
JMFS081C01+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
JMFS111B06+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
JMSF025L18+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
JMFS096D05+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
JMFS081B10+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
JMFS117C04+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
JMSF041M12+ CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
____________________________________________________________
consensus CCAATACTTAAGGGATCCTTCCACGGATTCATGGCAACGGAATGGGACATGAGCATCCCG
. : . : . : . : . : . :
JMFS081G03+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
JMFS081C01+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
JMFS111B06+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
JMSF025L18+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
JMFS096D05+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
JMFS081B10+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
JMFS117C04+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
JMSF041M12+ CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
____________________________________________________________
consensus CTTTTTCCATCTGAAGAATGAAGGATCTTCCCAAGGCTTGTAAGCGCTGCTATTTGGGGG
. : . : . : . : . : . :
JMFS081G03+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
JMFS081C01+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
JMFS111B06+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
JMSF025L18+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
JMFS096D05+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
JMFS081B10+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
JMFS117C04+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
JMSF041M12+ AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
____________________________________________________________
consensus AACCACCATTTGACTAATTACAAAAGCCATCCCCTTTCCAGGCAACGAATCAACGAAACA
. : . : . : . : . : . :
JMFS081G03+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
JMFS081C01+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
JMFS111B06+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
JMSF025L18+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
JMFS096D05+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
JMFS081B10+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
JMFS117C04+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
JMSF041M12+ AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
____________________________________________________________
consensus AGAAGAGTTGCAATGACACAAACGCGGTGGAGAGAAGAATTTGAATCATCAAAAGGAAGA
. : . : . : . : . : . :
JMFS081G03+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
JMFS081C01+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
JMFS111B06+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
JMSF025L18+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
JMFS096D05+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
JMFS081B10+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
JMFS117C04+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGT
JMSF041M12+ AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
____________________________________________________________
consensus AGATTGGCGATGGATTTGATTTTGAAAGGTATAATAATAATAAGTAGAAGAGTGGAGTGA
. : . : . : . : . : . :
JMFS081G03+ GTGCTCTGAGCAAGAAAGTGAAAGGG
JMFS081C01+ GTGCTCTGAGCAAGAAAGTGAAAGGGC
JMFS111B06+ GTGCTCTGAGCAAGAAAGTGAAA
JMSF025L18+ GTGCTCTGAGCAAGAAAGTGAAAGGGCAGACACTAGTCACGAATGGGATGAGATC
JMFS096D05+ GTGCTCTGAGCAAGAAAGTGAAAGGGC
JMFS081B10+ GTGCTC
JMSF041M12+ GTGCTCTGAGCAAGAAAGTGAAAGGGCAGACACTAGTCACGAATGGGATGAGATCACTTT
____________________________________________________________
consensus GTGCTCTGAGCAAGAAAGTGAAAGGGCAGACACTAGTCACGAATGGGATGAGATCACTTT
. : . : . : . : . : . :
JMSF041M12+ CATTTTCGGCACGTTGGAACTTTTATCCTTTACTTAGTGCACAGTGCACTGCTCCCCCTC
____________________________________________________________
consensus CATTTTCGGCACGTTGGAACTTTTATCCTTTACTTAGTGCACAGTGCACTGCTCCCCCTC