Previous Contig 007434:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025E21Sequence558007434 (6)gb:AY054674_15633282e-61Arabidopsis thaliana Unknown protein (At5g67130; K21H1.9) mRNA, complete cds.>gb740010564 (6)gb:AY087841_15728681e-48Arabidopsis thaliana clone 38897 mRNA, complete sequence.
JMFF025P15Sequence527007434 (6)gb:AY087841_15728688e-55Arabidopsis thaliana clone 38897 mRNA, complete sequence.786010564 (6)gb:AY087841_15728681e-57Arabidopsis thaliana clone 38897 mRNA, complete sequence.
JMFF035B16Sequence572007434 (6)gb:AY054674_15633288e-63Arabidopsis thaliana Unknown protein (At5g67130; K21H1.9) mRNA, complete cds.>gb789010564 (6)gb:AY087841_15728686e-59Arabidopsis thaliana clone 38897 mRNA, complete sequence.
JMFF045K01Sequence557007434 (6)gb:AY054674_15633287e-61Arabidopsis thaliana Unknown protein (At5g67130; K21H1.9) mRNA, complete cds.>gb648010564 (6)gb:AY087841_15728683e-26Arabidopsis thaliana clone 38897 mRNA, complete sequence.
JMSF033F20Sequence725007434 (6)gb:AY054674_15633289e-90Arabidopsis thaliana Unknown protein (At5g67130; K21H1.9) mRNA, complete cds.>gb750010564 (6)gb:AY087841_15728682e-50Arabidopsis thaliana clone 38897 mRNA, complete sequence.
JMSF041K24Sequence796007434 (6)gb:AY054674_15633281e-62Arabidopsis thaliana Unknown protein (At5g67130; K21H1.9) mRNA, complete cds.>gb623010564 (6)gb:AY087841_15728681e-24Arabidopsis thaliana clone 38897 mRNA, complete sequence.

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF033F20+ TTCGCCCTTTTTTGGCATCTTAGACACTGGAAACCAATACTTGTCCAATCCAGCA
                      ____________________________________________________________
consensus TTCGCCCTTTTTTGGCATCTTAGACACTGGAAACCAATACTTGTCCAATCCAGCA
 
. : . : . : . : . : . :
JMSF033F20+ CCACTGAACACTCTCGTCAAACCTTTAGGGCTATGTACATAATCCTCAATTATAATCGTG
                      ____________________________________________________________
consensus CCACTGAACACTCTCGTCAAACCTTTAGGGCTATGTACATAATCCTCAATTATAATCGTG
 
. : . : . : . : . : . :
JMSF033F20+ ACTATCTCAGAAGGGTTGGCAGACAAAAAAGCTTCTATTTCTTTAAGCGTGTTAATCGCT
JMFF035B16+ AAGCGTGTTAATCGCT
JMFF045K01+ GCT
JMFF025E21+ CGCT
JMSF041K24+ AAGCGTGTTAATCGCT
                      ____________________________________________________________
consensus ACTATCTCAGAAGGGTTGGCAGACAAAAAAGCTTCTATTTCTTTAAGCGTGTTAATCGCT
 
. : . : . : . : . : . :
JMSF033F20+ GGCTCAAAAGCTGTGAAGTTGTAACATTGGCCGCGGAGCGAGTGGCAGAGCCAGATATCA
JMFF035B16+ GGCTCAAAAGCTGTGAAGTTGTAACATTGGCCGCGGAGCGAGTGGCAGAGCCAGATATCA
JMFF045K01+ GGCTCAAAAGCTGTGAAGTTGTAACATTGGCCGCGGAGCGAGTGGCAGAGCCAGATATCA
JMFF025P15+ TGGCCGCGGAGCGAGTGGCAGAGCCAGATATCA
JMFF025E21+ GGCTCAAAAGCTGTGAAGTTGTAACATTGGCCGCGGAGCGAGTGGCAGAGCCAGATATCA
JMSF041K24+ GGCTCAAAAGCTGTGAAGTTGTAACATTGGCCGCGGAGCGAGTGGCAGAGCCAGATATCA
                      ____________________________________________________________
consensus GGCTCAAAAGCTGTGAAGTTGTAACATTGGCCGCGGAGCGAGTGGCAGAGCCAGATATCA
 
. : . : . : . : . : . :
JMSF033F20+ TTCTCGAAATCATACATATCCAGCATGAATCCCCTCACTCCATTCCTTAACTGGTTAGTA
JMFF035B16+ TTCTCGAAATCATACATATCCAGCATGAATCCCCTCACTCCATTCCTTAACTGGTTAGTA
JMFF045K01+ TTCTCGAAATCATACATATCCAGCATGAATCCCCTCACTCCATTCCTTAACTGGTTAGTA
JMFF025P15+ TTCTCGAAATCATACATATCCAGCATGAATCCCCTCACTCCATTCCTTAACTGGTTAGTA
JMFF025E21+ TTCTCGAAATCATACATATCCAGCATGAATCCCCTCACTCCATTCCTTAACTGGTTAGTA
JMSF041K24+ TTCTCGAAATCATACATATCCAGCATGAATCCCCTCACTCCATTCCTTAACTGGTTAGTA
                      ____________________________________________________________
consensus TTCTCGAAATCATACATATCCAGCATGAATCCCCTCACTCCATTCCTTAACTGGTTAGTA
 
. : . : . : . : . : . :
JMSF033F20+ ACAGTGTCTTCTTGATTACAGAAAGTAAGTCTCTGAGCTCCTGTCAGTAATGGAGCATCA
JMFF035B16+ ACAGTGTCTTCTTGATTACAGAAAGTAAGTCTCTGAGCTCCTGTCAGTAATGGAGCATCA
JMFF045K01+ ACAGTGTCTTCTTGATTACAGAAAGTAAGTCTCTGAGCTCCTGTCAGTAATGGAGCATCA
JMFF025P15+ ACAGTGTCTTCTTGATTACAGAAAGTAAGTCTCTGAGCTCCTGTCAGTAATGGAGCATCA
JMFF025E21+ ACAGTGTCTTCTTGATTACAGAAAGTAAGTCTCTGAGCTCCTGTCAGTAATGGAGCATCA
JMSF041K24+ ACAGTGTCTTCTTGATTACAGAAAGTAAGTCTCTGAGCTCCTGTCAGTAATGGAGCATCA
                      ____________________________________________________________
consensus ACAGTGTCTTCTTGATTACAGAAAGTAAGTCTCTGAGCTCCTGTCAGTAATGGAGCATCA
 
. : . : . : . : . : . :
JMSF033F20+ ACTATAGAAAAGGCATTATGGGTCACCAGCCATGAGTACTTGTTGAAGGGTAACCCACTG
JMFF035B16+ ACTATAGAAAAGGCATTATGGGTCACCAGCCATGAGTACTTGTTGAAGGGTAACCCACTG
JMFF045K01+ ACTATAGAAAAGGCATTATGGGTCACCAGCCATGAGTACTTGTTGAAGGGTAACCCACTG
JMFF025P15+ ACTATAGAAAAGGCATTATGGGTCACCAGCCATGAGTACTTGTTGAAGGGTAACCCACTG
JMFF025E21+ ACTATAGAAAAGGCATTATGGGTCACCAGCCATGAGTACTTGTTGAAGGGTAACCCACTG
JMSF041K24+ ACTATAGAAAAGGCATTATGGGTCACCAGCCATGAGTACTTGTTGAAGGGTAACCCACTG
                      ____________________________________________________________
consensus ACTATAGAAAAGGCATTATGGGTCACCAGCCATGAGTACTTGTTGAAGGGTAACCCACTG
 
. : . : . : . : . : . :
JMSF033F20+ ATAATGGAAGTGGGTACAGTGGCTTGTCCTCTTATGCAAAAAGGTTGATTCTTTCCCATT
JMFF035B16+ ATAATGGAAGTGGGTACAGTGGCTTGTCCTCTTATGCAAAAAGGTTGATTCTTTCCCATT
JMFF045K01+ ATAATGGAAGTGGGTACAGTGGCTTGTCCTCTTATGCAAAAAGGTTGATTCTTTCCCATT
JMFF025P15+ ATAATGGAAGTGGGTACAGTGGCTTGTCCTCTTATGCAAAAAGGTTGATTCTTTCCCATT
JMFF025E21+ ATAATGGAAGTGGGTACAGTGGCTTGTCCTCTTATGCAAAAAGGTTGATTCTTTCCCATT
JMSF041K24+ ATAATGGAAGTGGGTACAGTGGCTTGTCCTCTTATGCAAAAAGGTTGATTCTTTCCCATT
                      ____________________________________________________________
consensus ATAATGGAAGTGGGTACAGTGGCTTGTCCTCTTATGCAAAAAGGTTGATTCTTTCCCATT
 
. : . : . : . : . : . :
JMSF033F20+ ACCGGGCAATTCCCGCAGTAAAGCCCAGCCCCACAGTCCGTGGCCGAAGCACACGAATCA
JMFF035B16+ ACCGGGCAATTCCCGCAGTAAAGCCCAGCCCCACAGTCCGTGGCCGAAGCACACGAATCA
JMFF045K01+ ACCGGGCAATTCCCGCAGTAAAGCCCAGCCCCACAGTCCGTGGCCGAAGCACACGAATCA
JMFF025P15+ ACCGGGCAATTCCCGCAGTAAAGCCCAGCCCCACAGTCCGTGGCCGAAGCACACGAATCA
JMFF025E21+ ACCGGGCAATTCCCGCAGTAAAGCCCAGCCCCACAGTCCGTGGCCGAAGCACACGAATCA
JMSF041K24+ ACCGGGCAATTCCCGCAGTAAAGCCCAGCCCCACAGTCCGTGGCCGAAGCACACGAATCA
                      ____________________________________________________________
consensus ACCGGGCAATTCCCGCAGTAAAGCCCAGCCCCACAGTCCGTGGCCGAAGCACACGAATCA
 
. : . : . : . : . : . :
JMSF033F20+ AGAAGCTGGCAATTGCCGTTAAAGCAGGCGGCAGATGGGGCGATGAAGAAGACATCTGAG
JMFF035B16+ AGAAGCTGGCAATTGCCGTTAAAGCAGGCGGCAGATGGGGCGATGAAGAAGACATCTGAG
JMFF045K01+ AGAAGCTGGCAATTGCCGTTAAAGCAGGCGGCAGATGGGGCGATGAAGAAGACATCTGAG
JMFF025P15+ AGAAGCTGGCAATTGCCGTTAAAGCAGGCGGCAGATGGGGCGATGAAGAAGACATCTGAG
JMFF025E21+ AGAAGCTGGCAATTGCCGTTAAAGCAGGCGGCAGATGGGGCGATGAAGAAGACATCTGAG
JMSF041K24+ AGAAGCTGGCAATTGCCGTTAAAGCAGGCGGCAGATGGGGCGATGAAGAAGACATCTGAG
                      ____________________________________________________________
consensus AGAAGCTGGCAATTGCCGTTAAAGCAGGCGGCAGATGGGGCGATGAAGAAGACATCTGAG
 
. : . : . : . : . : . :
JMSF033F20+ AGGATAAATGATAGGAGAAGAAGGTACCCTTTTGAAGAGGGACCTTGAGCTCCTCCGCAG
JMFF035B16+ AGGATAAATGATAGGAGAAGAAGGTACCCTTTTGAAGAGGGACCTTGAGCTCCTCCGCAG
JMFF045K01+ AGGATAAATGATAGGAGAAGAAGGTACCCTTTTGAAGAGGGACCTTGAGCTCCTCCGCAG
JMFF025P15+ AGGATAAATGATAGGAGAAGAAGGTACCCTTTTGAAGAGGGACCTTGAGCTCCTCCGCAG
JMFF025E21+ AGGATAAATGATAGGAGAAGAAGGTACCCTTTTGAAGAGGGACCTTGAGCTCCTCCGCAG
JMSF041K24+ AGGATAAATGATAGGAGAAGAAGGTACCCTTTTGAAGAGGGACCTTGAGCTCCTCCGCAG
                      ____________________________________________________________
consensus AGGATAAATGATAGGAGAAGAAGGTACCCTTTTGAAGAGGGACCTTGAGCTCCTCCGCAG
 
. : . : . : . : . : . :
JMSF033F20+ TTGATTCTCCGGCGATTCTTCATGCTGAGAATGCGCTCCGCCGCGAAA-CCCGACACAGA
JMFF035B16+ TTGATTCTCCGGCGATTCTTCATGCTGAGAATGCGCTCCGCCGCGAAACCCCGACACAGA
JMFF045K01+ TTGATTCTCCGGCGATTCTTCATGCTGAGAATGCGCTCCGCCGCGAAACCCCGACACAGA
JMFF025P15+ TTGATTCTCCGGCGATTCTTCATGCTGAGAATGCGCTCCGCCGCGAAACCCCGACACAGA
JMFF025E21+ TTGATTCTCCGGCGATTCTTCATGCTGAGAATGCGCTCCGCCGCGAAACCCCGACACAGA
JMSF041K24+ TTGATTCTCCGGCGATTCTTCATGCTGAGAATGCGCTCCGCCGCGAAACCCCGACACAGA
                      ____________________________________________________________
consensus TTGATTCTCCGGCGATTCTTCATGCTGAGAATGCGCTCCGCCGCGAAACCCCGACACAGA
 
. : . : . : . : . : . :
JMSF033F20+ TTAAATCAC
JMFF035B16+ TTAAATCACAAAAT
JMFF045K01+ TTAAATCACAAAAT
JMFF025P15+ TTAAATCACAAAAT
JMFF025E21+ TTAAATCACAAAAT
JMSF041K24+ TTAAATCACAAAATGAGAAAAGATTCTACGACATAGTCATAGTATTTATAGGAGCAGCCT
                      ____________________________________________________________
consensus TTAAATCACAAAATGAGAAAAGATTCTACGACATAGTCATAGTATTTATAGGAGCAGCCT
 
. : . : . : . : . : . :
JMSF041K24+ TAAATCCCTTAATTATTAAGTTTATAAGTAAAAGAAGTGTCGCATGATGAAGCAGATAGG
                      ____________________________________________________________
consensus TAAATCCCTTAATTATTAAGTTTATAAGTAAAAGAAGTGTCGCATGATGAAGCAGATAGG
 
. : . : . : . : . : . :
JMSF041K24+ GAAAGCAAAAGATGAGTGTAACTGAGAAAGAGAGAGAGAGAGAGATAGAGGGAGCAGAAG
                      ____________________________________________________________
consensus GAAAGCAAAAGATGAGTGTAACTGAGAAAGAGAGAGAGAGAGAGATAGAGGGAGCAGAAG
 
. : . : . : . : . : . :
JMSF041K24+ ATGCCAATTTTCGTGTTCCTTTACCTCTCCCAGCAACTACTTTACTTTTTTACGCCATTC
                      ____________________________________________________________
consensus ATGCCAATTTTCGTGTTCCTTTACCTCTCCCAGCAACTACTTTACTTTTTTACGCCATTC