Previous Contig 007342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034B21Sequence437007342 (3)gb:AY484589_16083322e-17Musa acuminata clone MuH9, genomic sequence.713009801 (2)gb:ATH510211_15528354e-36Arabidopsis thaliana ari8 gene for ARIADNE-like protein ARI8, exons 1-15.>gb:AY0
JMFS056D09Sequence565007342 (3)gb:AY484589_16083328e-38Musa acuminata clone MuH9, genomic sequence.
JMSF040D07Sequence664007342 (3)gb:AY484589_16083323e-43Musa acuminata clone MuH9, genomic sequence.853009801 (2)gb:OSJN00138_16955186e-63Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ990528_30, complete sequenc

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF040D07+ TGCT
                      ____________________________________________________________
consensus TGCT
 
. : . : . : . : . : . :
JMFS056D09+ CAAAAAGGATGGCCGCAAGCAGCAGAACTAATTCC
JMSF040D07+ AATATACCCTTGCCAGCATGTGACACAAAAAGGATGGCCGCAAGCAGCAGAACTAATTCC
                      ____________________________________________________________
consensus AATATACCCTTGCCAGCATGTGACACAAAAAGGATGGCCGCAAGCAGCAGAACTAATTCC
 
. : . : . : . : . : . :
JMFS056D09+ ATCACGAGGATACGTCTCAAAACAGATCCCACAAGTTATCTCTTTTTCATTAGGAAGTGG
JMSF040D07+ ATCACGAGGATACGTCTCAAAACAGATCCCACAAGTTATCTCTTTTTCATTAGGAAGTGG
                      ____________________________________________________________
consensus ATCACGAGGATACGTCTCAAAACAGATCCCACAAGTTATCTCTTTTTCATTAGGAAGTGG
 
. : . : . : . : . : . :
JMFS056D09+ AGTAGGATTCTCTAACAAGCCAACAGTCCTGCGAACCTTCTCTTCATCTGCAAACCATTC
JMFF034B21+ TTCTCTTCATCTGCAAACCATTC
JMSF040D07+ AGTAGGATTCTCTAACAAGCCAACAGTCCTGCGAACCTTCTCTTCATCTGCAAACCATTC
                      ____________________________________________________________
consensus AGTAGGATTCTCTAACAAGCCAACAGTCCTGCGAACCTTCTCTTCATCTGCAAACCATTC
 
. : . : . : . : . : . :
JMFS056D09+ ATCGTTCACTTTACTGACACTCCAGTTAAAATGGCGAAGCAAGATGCCGGCTGCATCCTT
JMFF034B21+ ATCGTTCACTTTACTGACACTCCAGTTAAAATGGCGAAGCAAGATGCCGGCTGCATCCTT
JMSF040D07+ ATCGTTCACTTTACTGACACTCCAGTTAAAATGGCGAAGCAAGATGCCGGCTGCATCCTT
                      ____________________________________________________________
consensus ATCGTTCACTTTACTGACACTCCAGTTAAAATGGCGAAGCAAGATGCCGGCTGCATCCTT
 
. : . : . : . : . : . :
JMFS056D09+ TGATATGGAAAGCACCGTAGCTATCTTCATCATAGTTTCTTCTTGACGTTGACGTATATC
JMFF034B21+ TGATATGGAAAGCACCGTAGCTATCTTCATCATAGTTTCTTCTTGACGTTGACGTATATC
JMSF040D07+ TGATATGGAAAGCACCGTAGCTATCTTCATCATAGTTTCTTCTTGACGTTGACGTATATC
                      ____________________________________________________________
consensus TGATATGGAAAGCACCGTAGCTATCTTCATCATAGTTTCTTCTTGACGTTGACGTATATC
 
. : . : . : . : . : . :
JMFS056D09+ AGCTTCGTTCAAAATGGTATAGTTGGTCTGGGAGCGATAATGGGAGACGAGGCTGTCGGA
JMFF034B21+ AGCTTCGTTCAAAATGGTATAGTTGGTCTGGGAGCGATAATGGGAGACGAGGCTGTCGGA
JMSF040D07+ AGCTTCGTTCAAAATGGTATAGTTGGTCTGGGAGCGATAATGGGAGACGAGGCTGTCGGA
                      ____________________________________________________________
consensus AGCTTCGTTCAAAATGGTATAGTTGGTCTGGGAGCGATAATGGGAGACGAGGCTGTCGGA
 
. : . : . : . : . : . :
JMFS056D09+ ATCATCAGAGTCGTTGTCGATGAAGTCGTAATCCATGATGACGTCATCGTCGTCGGAGTC
JMFF034B21+ ATCATCAGAGTCGTTGTCGATGAAGTCGTAATCCANGATGACGTCATCGTCGTCGGAGTC
JMSF040D07+ ATCATCAGAGTCGTTGTCGATGAAGTCGTAATCCATGATGACGTCATCGTCGTCGGAGTC
                      ____________________________________________________________
consensus ATCATCAGAGTCGTTGTCGATGAAGTCGTAATCCATGATGACGTCATCGTCGTCGGAGTC
 
. : . : . : . : . : . :
JMFS056D09+ TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
JMFF034B21+ TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
JMSF040D07+ TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
                      ____________________________________________________________
consensus TTCGATGCGTCCACATCCGCCGCCGCCGTAGAAGTCGTCGTCTTCGTAGGAGTCTCCGTC
 
. : . : . : . : . : . :
JMFS056D09+ GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCGCACCTCTCGGCTCTCTCTCTCTCT
JMFF034B21+ GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCTCACCTCTCGGCTCTCTCTCTCTCT
JMSF040D07+ GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCGCACCTCTCGGCTCTCTCTCTCTCT
                      ____________________________________________________________
consensus GTCCGCCATTATCATTTCGTCGCCAGATTCCATTCGCACCTCTCGGCTCTCTCTCTCTCT
 
. : . : . : . : . : . :
JMFS056D09+ CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAG
JMFF034B21+ CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAG
JMSF040D07+ CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAGAAATGACTCA
                      ____________________________________________________________
consensus CTCTCTCCCTCCCTCCCTCTCTCTTCAACGGAAATTGTAAAAAGCTCTAGAAATGACTCA
 
. : . : . : . : . : . :
JMSF040D07+ TCTTTTGGAAAGAAGCTTTTGTTATTCACTCCCCATTTTATATTGGTGGAACACAGTACC
                      ____________________________________________________________
consensus TCTTTTGGAAAGAAGCTTTTGTTATTCACTCCCCATTTTATATTGGTGGAACACAGTACC