Previous Contig 007216:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004H14Sequence426007216 (4)
JMSF032K23Sequence725007216 (4)gb:AE005173_8954813e-42Arabidopsis thaliana chromosome 1, bottom arm complete sequence.>gb:AC010793_153683014030 (3)gb:AY039869_15603838e-75Arabidopsis thaliana At1g79600/F20B17_3 mRNA, complete cds.
JMSF038G11Sequence655007216 (4)gb:AE005173_8954811e-27Arabidopsis thaliana chromosome 1, bottom arm complete sequence.>gb:AC010793_153862014030 (3)gb:AY039869_15603839e-75Arabidopsis thaliana At1g79600/F20B17_3 mRNA, complete cds.
JMSF052N09Sequence723007216 (4)gb:AE005173_8954813e-42Arabidopsis thaliana chromosome 1, bottom arm complete sequence.>gb:AC010793_153915014030 (3)gb:AC134346_1741756e-101Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03, complete seq

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF052N09+ TGGCTGCAGCAATNGGA
JMSF032K23+ AGCAATGGGA
                      ____________________________________________________________
consensus TGGCTGCAGCAATGGGA
 
. : . : . : . : . : . :
JMSF052N09+ TATGCAGATATAGAGGAGTAGATAGAATCGAGTGGACGTCCCAACTCCCTCTCAATACAG
JMSF032K23+ TATGCAGATATAGAGGAGTAGATAGAATCGAGTGGACGTCCCAACTCCCTCTCAATACAG
                      ____________________________________________________________
consensus TATGCAGATATAGAGGAGTAGATAGAATCGAGTGGACGTCCCAACTCCCTCTCAATACAG
 
. : . : . : . : . : . :
JMSF052N09+ GAAAATGCTTCCACATCAGGAAAAGTTGGCAAAGCATCCTGCAACTTAGAAAGCTCCTCA
JMSF032K23+ GAAAATGCTTCCACATCAGGAAAAGTTGGCAAAGCATCCTGCAACTTAGAAAGCTCCTCA
                      ____________________________________________________________
consensus GAAAATGCTTCCACATCAGGAAAAGTTGGCAAAGCATCCTGCAACTTAGAAAGCTCCTCA
 
. : . : . : . : . : . :
JMSF052N09+ AGAAATTCCGGCGGACATAAATCAGGTCGGGTGGATAATCCTTGGCCAAGTTTAACAAAA
JMSF032K23+ AGAAATTCCGGCGGACATAAATCAGGTCGGGTGGATAATCCTTGGCCAAGTTTAACAAAA
JMSF038G11+ TTCCGGCGGACATAAATCAGGTCGGGTGGATAATCCTTGGCCAAGTTTAACAAAA
                      ____________________________________________________________
consensus AGAAATTCCGGCGGACATAAATCAGGTCGGGTGGATAATCCTTGGCCAAGTTTAACAAAA
 
. : . : . : . : . : . :
JMSF052N09+ GTAGGACCTAAATTGGTGAAAATCTCCCTTAGCTCAACGGCGCGTAATCTTCTATTCTGG
JMSF032K23+ GTAGGACCTAAATTGGTGAAAATCTCCCTTAGCTCAACGGCGCGTAATCTTCTATTCTGG
JMSF038G11+ GTAGGACCTAAATTGGTGAAAATCTCCCTTAGCTCAACGGCGCGTAATCTTCTATTCTGG
                      ____________________________________________________________
consensus GTAGGACCTAAATTGGTGAAAATCTCCCTTAGCTCAACGGCGCGTAATCTTCTATTCTGG
 
. : . : . : . : . : . :
JMSF052N09+ TCCAGCTGGCCGTTCAATTGGTCGAGCCACAGGCTAAGGCCGAAAGAACCAAGCCCAGTG
JMSF032K23+ TCCAGCTGGCCGTTCAATTGGTCGAGCCACAGGCTAAGGCCGAAAGAACCAAGCCCAGTG
JMSF038G11+ TCCAGCTGGCCGTTCAATTGGTCGAGCCACAGGCTAAGGCCGAAAGAACCAAGCCCAGTG
                      ____________________________________________________________
consensus TCCAGCTGGCCGTTCAATTGGTCGAGCCACAGGCTAAGGCCGAAAGAACCAAGCCCAGTG
 
. : . : . : . : . : . :
JMSF052N09+ AATATCTCGAGAGCTCTGCTCAACACCTTGATGGGTCGAGGGCCATACTTAGCGGACAAG
JMSF032K23+ AATATCTCGAGAGCTCTGCTCAACACCTTGATGGGTCGAGGGCCATACTTAGCGGACAAG
JMSF004H14+ ACTTAGCGGACAAG
JMSF038G11+ AATATCTCGAGAGCTCTGCTCAACACCTTGATGGGTCGAGGGCCATACTTAGCGGACAAG
                      ____________________________________________________________
consensus AATATCTCGAGAGCTCTGCTCAACACCTTGATGGGTCGAGGGCCATACTTAGCGGACAAG
 
. : . : . : . : . : . :
JMSF052N09+ AGTTGTGGGCTATAAACTGAAGCGTTTGCTGCACGCGCCATTGCCCTAGCTTCAGCTTGC
JMSF032K23+ AGTTGTGGGCTATAAACTGAAGCGTTTGCTGCACGCGCCATTGCCCTAGCTTCAGCTTGC
JMSF004H14+ AGTTGTGGGCTATAAACTGAAGCGTTTGCTGCACGCGCCATTGCCCTAGCTTCAGCTTGC
JMSF038G11+ AGTTGTGGGCTATAAACTGAAGCGTTTGCTGCACGCGCCATTGCCCTAGCTTCAGCTTGC
                      ____________________________________________________________
consensus AGTTGTGGGCTATAAACTGAAGCGTTTGCTGCACGCGCCATTGCCCTAGCTTCAGCTTGC
 
. : . : . : . : . : . :
JMSF052N09+ ATATCGTCTGCTCGATCTCTACTGGATGGAATGGAGGAAGTGACTTCGCCTCGTTGCAGA
JMSF032K23+ ATATCGTCTGCTCGATCTCTACTGGATGGAATGGAGGAAGTGACTTCGCCTCGTTGCAGA
JMSF004H14+ ATATCGTCTGCTCGATCTCTACTGGATGGAATGGAGGAAGTGACTTCGCCTCGTTGCAGA
JMSF038G11+ ATATCGTCTGCTCGATCTCTACTGGATGGAATGGAGGAAGTGACTTCGCCTCGTTGCAGA
                      ____________________________________________________________
consensus ATATCGTCTGCTCGATCTCTACTGGATGGAATGGAGGAAGTGACTTCGCCTCGTTGCAGA
 
. : . : . : . : . : . :
JMSF052N09+ GATTGCAAAGAACCATTACTGTTGTCAGACGACCGGTCTCTGATGGCTGGCACCTGTCTG
JMSF032K23+ GATTGCAAAGAACCATTACTGTTGTCAGACGACCGGTCTCTGATGGCTGGCACCTGTCTG
JMSF004H14+ GATTGCAAAGAACCATTACTGTTGTCAGACGACCGGTCTCTGATGGCTGGCACCTGTCTG
JMSF038G11+ GATTGCAAAGAACCATTACTGTTGTCAGACGACCGGTCTCTGATGGCTGGCACCTGTCTG
                      ____________________________________________________________
consensus GATTGCAAAGAACCATTACTGTTGTCAGACGACCGGTCTCTGATGGCTGGCACCTGTCTG
 
. : . : . : . : . : . :
JMSF052N09+ GGTCCAGCCTCCACCAGGGCCGCTCGTACAAGATGTGTTTTCTTCTGTCTCCCCCTCTTC
JMSF032K23+ GGTCCAGCCTCCACCAGGGCCGCTCGTACAAGATGTGTTTTCTTCTGTCTCCCCCTCTTC
JMSF004H14+ GGTCCAGCCTCCACCAGGGCCGCTCGTACAAGATGTGTTTTCTTCTGTCTCCCCCTCTTC
JMSF038G11+ GGTCCAGCCTCCACCAGGGCCGCTCGTACAAGATGTGTTTTCTTCTGTCTCCCCCTCTTC
                      ____________________________________________________________
consensus GGTCCAGCCTCCACCAGGGCCGCTCGTACAAGATGTGTTTTCTTCTGTCTCCCCCTCTTC
 
. : . : . : . : . : . :
JMSF052N09+ TTCTCCCATGAAAGAGTTGGGGAGCCAGAAACCCTAGCAACGCCAGGCGATGTCGGTAGA
JMSF032K23+ TTCTCCCATGAAAGAGTTGGGGAGCCAGAAACCCTAGCAACGCCAGGCGATGTCGGTAGA
JMSF004H14+ TTCTCCCATGAAAGAGTTGGGGAGCCAGAAACCCTAGCAACGCCAGGCGATGTCGGTAGA
JMSF038G11+ TTCTCCCATGAAAGAGTTGGGGAGCCAGAAACCCTAGCAACGCCAGGCGATGTCGGTAGA
                      ____________________________________________________________
consensus TTCTCCCATGAAAGAGTTGGGGAGCCAGAAACCCTAGCAACGCCAGGCGATGTCGGTAGA
 
. : . : . : . : . : . :
JMSF052N09+ GCAAATGAAGGAGCGGCCTTCAAAGATACTGCGAAGGAACTCATC
JMSF032K23+ GCAAATGAAGGAGCGGCCTTCAAAGATACTGCGAAGGAACTCATCGCTTCGCCT
JMSF004H14+ GCAAATGAAGGAGCGGCCTTCAAAGATACTGCGAAGGAACTCATCGCTTCGCCTGCCGAT
JMSF038G11+ GCAAATGAAGGAGCGGCCTTCAAAGATACTGCGAAGGAACTCATCGCTTCGCCTGCCGAT
                      ____________________________________________________________
consensus GCAAATGAAGGAGCGGCCTTCAAAGATACTGCGAAGGAACTCATCGCTTCGCCTGCCGAT
 
. : . : . : . : . : . :
JMSF004H14+ ATGATTTCAGGATCTTCTAATTGACGGGCAGGGAGAACGCAGGAATGAGCT
JMSF038G11+ ATGATTTCAGGATCTTCTAATTGACGGGCAGGGAGAACGCAGGAATGAGCTAGGACGAAC
                      ____________________________________________________________
consensus ATGATTTCAGGATCTTCTAATTGACGGGCAGGGAGAACGCAGGAATGAGCTAGGACGAAC