clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF007P13 | Sequence | 121 | 007177 (4) | 153 | 020808 | ||||||
JMSF001N11 | Sequence | 664 | 007177 (4) | gb:AP005644_1855341 | 6e-07 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJN | |||||
JMSF037N09 | Sequence | 666 | 007177 (4) | gb:AP005644_1855345 | 0.002 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJN | 606 | 007177 (4) | gb:AP005644_1855345 | 0.006 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJN |
This contig is upended
. : . : . : . : . : . :
JMFF007P13+ TTTTTTTTTTCTTTTTTGAATATGCAATCCC
____________________________________________________________
consensus TTTTTTTTTTCTTTTTTGAATATGCAATCCC
. : . : . : . : . : . :
JMFF007P13+ AACTTTTTTTTTTGATAATACAATCCCAACTTTCTAATCACTCCATTGAAGACCAAACCT
rJMSF001N11- ATCCCAACTTTCTAATCACTCCATTGAAGACCAAACCT
____________________________________________________________
consensus AACTTTTTTTTTTGATAATACAATCCCAACTTTCTAATCACTCCATTGAAGACCAAACCT
. : . : . : . : . : . :
JMFF007P13+ CGACACATATAATCATACTATGATACTAAA
rJMSF001N11- CGACACATATAATCATACTATGATACTAAACCCCAAAACTTGTTCCAAACAACCTAATTC
rJMSF037N09- TTC
____________________________________________________________
consensus CGACACATATAATCATACTATGATACTAAACCCCAAAACTTGTTCCAAACAACCTAATTC
. : . : . : . : . : . :
rJMSF001N11- TTTTATACACACTTTGTTTTAGACCGACCAGTAAAATCGCAATCACAAACTATTTGGGAG
rJMSF037N09- TTTTATACNCNCTTTGTTTTANACCGACCAGTAAANTCNCANTCACAAACTATTTGGGAG
JMSF037N09+ TGGGAG
____________________________________________________________
consensus TTTTATACACACTTTGTTTTAGACCGACCAGTAAAATCGCAATCACAAACTATTTGGGAG
. : . : . : . : . : . :
rJMSF001N11- TGNGCACGGGATATACNCGCTTGTTTTGATGCGATTAANGATGGATTTCATCATCTGATC
rJMSF037N09- NGTGCACGGGATATACACGCTNGTTTTGATGCGATTAANGATGGATTTCATCATCTGATC
JMSF037N09+ TGTGCACGGGATATACACGCTTGTTTTGATGCGATTAATGATGGATTTCATCATCTGATC
____________________________________________________________
consensus TGTGCACGGGATATACACGCTTGTTTTGATGCGATTAATGATGGATTTCATCATCTGATC
. : . : . : . : . : . :
rJMSF001N11- TGATTATTCTGATCCTACTTGAAATGGATGGNGGGAGTTTACATAATANAGCANACGGAG
rJMSF037N09- TGATTATTCTGATCCTACTTGAAANGGATGGTGGGAGTTTACATAATAGAGCANACGGAG
JMSF037N09+ TGATTATTCTGATCCTACTTGAAATGGATGGTGGGAGTTTACATAATAGAGCAGACGGAG
____________________________________________________________
consensus TGATTATTCTGATCCTACTTGAAATGGATGGTGGGAGTTTACATAATAGAGCAGACGGAG
. : . : . : . : . : . :
rJMSF001N11- GGTTGGTAATCATGAACTGGGCAAGCGTAGTAAGGGGGGTAAGGAAAGNGAGAAGGATCC
rJMSF037N09- GGTTGGTAATCATGAACTGGGCAAGCGTAGTAAGGGGGGTAAGGAAAGTGAGAAGGATCC
JMSF037N09+ GGTTGGTAATCATGAACTGGGCAAGCGTAGTAAGGGGGGTAAGGAAAGTGAGAAGGATCC
____________________________________________________________
consensus GGTTGGTAATCATGAACTGGGCAAGCGTAGTAAGGGGGGTAAGGAAAGTGAGAAGGATCC
. : . : . : . : . : . :
rJMSF001N11- NGGAANACTGTAACGACTTTTGGNGGTTGGGCCTCGTCTTTCTTCTTATCCTCCTTCTTC
rJMSF037N09- NGGAANACTGTAACGACTTTTGGNGGTTGGGCCTCGTCTTTCTTCTTATCCTCCTTCTTC
JMSF037N09+ TGGAAGACTGTAACGACTTTTGGTGGTTGGGCCTCGTCTTTCTTCTTATCCTCCTTCTTC
____________________________________________________________
consensus TGGAAGACTGTAACGACTTTTGGTGGTTGGGCCTCGTCTTTCTTCTTATCCTCCTTCTTC
. : . : . : . : . : . :
rJMSF001N11- NCCTCCTTTTTCTCTTCCTTTTTCTCGGCCGAACCCACGCTCACTAGCTCCGCTTGCCCC
rJMSF037N09- TCCTCCTTTTTCTCTTCCTTTTTCTCGGCCGAACCCACGCTCACTAGCTCCGCTTGCCCC
JMSF037N09+ TCCTCCTTTTTCTCTTCCTTTTTCTCGGCCGAACCCACGCTCACTAGCTCCGCTTGCCCC
____________________________________________________________
consensus TCCTCCTTTTTCTCTTCCTTTTTCTCGGCCGAACCCACGCTCACTAGCTCCGCTTGCCCC
. : . : . : . : . : . :
rJMSF001N11- ACCCTCTTCCTCAGCAGGTTCGCCANAACCACCGAGTCGAACTCGCCCACCACCTCTAAC
rJMSF037N09- ACCCTCTTCCTCAGCAGGTTCGCCAGAACCACCGAGTCGAACTCGCCCACCACCTCTAAN
JMSF037N09+ ACCCTCTTCCTCAGCAGGTTCGCCAGAACCACCGAGTCGAACTCGCCCACCACCTCTAAC
____________________________________________________________
consensus ACCCTCTTCCTCAGCAGGTTCGCCAGAACCACCGAGTCGAACTCGCCCACCACCTCTAAC
. : . : . : . : . : . :
rJMSF001N11- TGCCCCTTCTCCGCTTGCATAGCCGCCGATTCAACCCC
rJMSF037N09- NGCCCCTTCTCCGCTTGCATANCCGCCGATTCAACCCCTGCAGGAAACCACAAAACTTGC
JMSF037N09+ TGCCCCTTCTCCGCTTGCATAGCCGCCGATTCAACCCCTGCAGGAAACCACAAAACTTGC
____________________________________________________________
consensus TGCCCCTTCTCCGCTTGCATAGCCGCCGATTCAACCCCTGCAGGAAACCACAAAACTTGC
. : . : . : . : . : . :
rJMSF037N09- CGGTAAAGACCAGTACTTGGNGAAAAATGTGATGACGGTCTATAAAGAAATAAAGTTATG
JMSF037N09+ CGGTAAAGACCAGTACTTGGTGAAAAATGTGATGACGGTCTATAAAGAAATAAAGTTATG
____________________________________________________________
consensus CGGTAAAGACCAGTACTTGGTGAAAAATGTGATGACGGTCTATAAAGAAATAAAGTTATG
. : . : . : . : . : . :
rJMSF037N09- CGTACCAGGCAGGCTGACGGCAATCTTGAAGGCCTTGGTACGAGCCTTCTGGTCCTTGAT
JMSF037N09+ CGTACCAGGCAGGCTGACGGCAATCTTGAAGGCCTTGGTACGAGCCTTCTGGTCCTTGAT
____________________________________________________________
consensus CGTACCAGGCAGGCTGACGGCAATCTTGAAGGCCTTGGTACGAGCCTTCTGGTCCTTGAT
. : . : . : . : . : . :
rJMSF037N09- TGA
JMSF037N09+ TGAGATACCGATCACTACCTTTTGCTTCCCCATTCTTTCTGCAGGCAGGGTAGAGAGATA
____________________________________________________________
consensus TGAGATACCGATCACTACCTTTTGCTTCCCCATTCTTTCTGCAGGCAGGGTAGAGAGATA
. : . : . : . : . : . :
JMSF037N09+ AAGCGGCGAAGAATAGAGAATTTAGAGAGAGAAAGAAGTATGGATGGAGCTACTACTCTC
____________________________________________________________
consensus AAGCGGCGAAGAATAGAGAATTTAGAGAGAGAAAGAAGTATGGATGGAGCTACTACTCTC