Previous Contig 007084:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038P02Sequence624007084 (6)gb:AY059775_15646259e-40Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds.>gb:AY096753
JMFS136H06Sequence582007084 (6)gb:AY059775_15646252e-43Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds.>gb:AY096753
JMFS155G05Sequence620007084 (6)gb:AY059775_15646252e-35Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds.>gb:AY096753
JMFS162A07Sequence626007084 (6)gb:AY059775_15646251e-45Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds.>gb:AY096753
JMSF036F13Sequence689007084 (6)gb:AY059775_15646251e-39Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds.>gb:AY096753748013033 (2)gb:AE005172_8910344e-44Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC069251_154073
JMSF039O19Sequence687007084 (6)gb:AY059775_15646258e-40Arabidopsis thaliana unknown protein (At1g20780) mRNA, complete cds.>gb:AY096753812013033 (2)pir|E96791|E967911e-47hypothetical protein F15M4.11 [imported] - Arabidopsis thaliana>gb:AE005173_8951

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS136H06+ TCAGCTCTGCA
JMFS162A07+ TGTCGATAATCATTGGTATCAGCTCTGCA
                      ____________________________________________________________
consensus TGTCGATAATCATTGGTATCAGCTCTGCA
 
. : . : . : . : . : . :
JMFS136H06+ TTTCGGATTACACGGGTATTAGACCTACTTTTCTGGCAGAGATGCTCAAGAGTATGCAAC
JMFS162A07+ TTTCGGATTACACGGGTATTAGACCTACTTTTCTGGCAGAGATGCTCAAGAGTATGCAAC
JMFF038P02+ TGGCAGAGATGCTCAAGAGTATGCAAC
JMSF039O19+ TGGCAGAGATGCTCAAGAGTATGCAAC
JMSF036F13+ GCAGAGATGCTCAAGAGTATGCAAC
                      ____________________________________________________________
consensus TTTCGGATTACACGGGTATTAGACCTACTTTTCTGGCAGAGATGCTCAAGAGTATGCAAC
 
. : . : . : . : . : . :
JMFS136H06+ ACTCGCAGAATATCAGTCTCTGCACTTCCCAGAGAGAGCGTTCTGCGAGCCATATCGAGC
JMFS162A07+ ACTCGCAGAATATCAGTCTCTGCACTTCCCAGAGAGAGCGTTCTGCGAGCCATATCGAGC
JMFF038P02+ ACTCGCAGAATATCAGTCTCTGCACTTCCCAGAGAGAGCGTTCTGCGAGCCATATCGAGC
JMSF039O19+ ACTCGCAGAATATCAGTCTCTGCACTTCCCAGAGAGAGCGTTCTGCGAGCCATATCGAGC
JMFS155G05+ TGCACTTCCCAGAGAGAGCGTTCTGCGAGCCATATCGAGC
JMSF036F13+ ACTCGCAGAATATCAGTCTCTGCACTTCCCAGAGAGAGCGTTCTGCGAGCCATATCGAGC
                      ____________________________________________________________
consensus ACTCGCAGAATATCAGTCTCTGCACTTCCCAGAGAGAGCGTTCTGCGAGCCATATCGAGC
 
. : . : . : . : . : . :
JMFS136H06+ TGAGCAGCTTCGTTACGTGCATTCCATTCTTCAATGGTGTTCCGCAAGGCTATACTTGGA
JMFS162A07+ TGAGCAGCTTCGTTACGTGCATTCCATTCTTCAATGGTGTTCCGCAAGGCTATACTTGGA
JMFF038P02+ TGAGCAGCTTCGTTACGTGCATTCCATTCTTCAATGGTGTTCCGCAAGGCTATACTTGGA
JMSF039O19+ TGAGCAGCTTCGTTACGTGCATTCCATTCTTCAATGGTGTTCCGCAAGGCTATACTTGGA
JMFS155G05+ TGAGCAGCTTCGTTACGTGCATTCCATTCTTCAATGGTGTTCCGCAAGGCTATACTTGGA
JMSF036F13+ TGAGCAGCTTCGTTACGTGCATTCCATTCTTCAATGGTGTTCCGCAAGGCTATACTTGGA
                      ____________________________________________________________
consensus TGAGCAGCTTCGTTACGTGCATTCCATTCTTCAATGGTGTTCCGCAAGGCTATACTTGGA
 
. : . : . : . : . : . :
JMFS136H06+ TTCAACTCTGTGCTTCTCAATTCTCTTTGTGTTAAGGGGCAGACGGGATTTCTTCTGCTT
JMFS162A07+ TTCAACTCTGTGCTTCTCAATTCTCTTTGTGTTAAGGGGCAGACGGGATTTCTTCTGCTT
JMFF038P02+ TTCAACTCTGTGCTTCTCAATTCTCTTTGTGTTAAGGGGCAGACGGGATTTCTTCTGCTT
JMSF039O19+ TTCAACTCTGTGCTTCTCAATTCTCTTTGTGTTAAGGGGCAGACGGGATTTCTTCTGCTT
JMFS155G05+ TTCAACTCTGTGCTTCTCAATTCTCTTTGTGTTAAGGGGCAGACGGGATTTCTTCTGCTT
JMSF036F13+ TTCAACTCTGTGCTTCTCAATTCTCTTTGTGTTAAGGGGCAGACGGGATTTCTTCTGCTT
                      ____________________________________________________________
consensus TTCAACTCTGTGCTTCTCAATTCTCTTTGTGTTAAGGGGCAGACGGGATTTCTTCTGCTT
 
. : . : . : . : . : . :
JMFS136H06+ GCCTTGCATTCATTAAACCATTTCTCAATTGCTTCCCTTTCAAAAGTTTGCCCACTTTCA
JMFS162A07+ GCCTTGCATTCATTAAACCATTTCTCAATTGCTTCCCTTTCAAAAGTTTGCCCACTTTCA
JMFF038P02+ GCCTTGCATTCATTAAACCATTTCTCAATTGCTTCCCTTTCAAAAGTTTGCCCACTTTCA
JMSF039O19+ GCCTTGCATTCATTAAACCATTTCTCAATTGCTTCCCTTTCAAAAGTTTGCCCACTTTCA
JMFS155G05+ GCCTTGCATTCATTAAACCATTTCTCAATTGCTTCCCTTTCAAAAGTTTGCCCACTTTCA
JMSF036F13+ GCCTTGCATTCATTAAACCATTTCTCAATTGCTTCCCTTTCAAAAGTTTGCCCACTTTCA
                      ____________________________________________________________
consensus GCCTTGCATTCATTAAACCATTTCTCAATTGCTTCCCTTTCAAAAGTTTGCCCACTTTCA
 
. : . : . : . : . : . :
JMFS136H06+ ATAGTTACAGGATCACGCATTACTTGCTTTGTAAGAGGACATATAAACGCATCATATGTA
JMFS162A07+ ATAGTTACAGGATCACGCATTACTTGCTTTGTAAGAGGACATATAAACGCATCATATGTA
JMFF038P02+ ATAGTTACAGGATCACGCATTACTTGCTTTGTAAGAGGACATATAAACGCATCATATGTA
JMSF039O19+ ATAGTTACAGGATCACGCATTACTTGCTTTGTAAGAGGACATATAAACGCATCATATGTA
JMFS155G05+ ATAGTTACAGGATCACGCATTACTTGCTTTGTAAGAGGACATATAAACGCATCATATGTA
JMSF036F13+ ATAGTTACAGGATCACGCATTACTTGCTTTGTAAGAGGACATATAAACGCATCATATGTA
                      ____________________________________________________________
consensus ATAGTTACAGGATCACGCATTACTTGCTTTGTAAGAGGACATATAAACGCATCATATGTA
 
. : . : . : . : . : . :
JMFS136H06+ GGTTCCAAATATAGTCTCTCAAAATGGTAGCTCTCGTCTGATGGGCTACCAATTTCAAGA
JMFS162A07+ GGTTCCAAATATAGTCTCTCAAAATGGTAGCTCTCGTCTGATGGGCTACCAATTTCAAGA
JMFF038P02+ GGTTCCAAATATAGTCTCTCAAAATGGTAGCTCTCGTCTGATGGGCTACCAATTTCAAGA
JMSF039O19+ GGTTCCAAATATAGTCTCTCAAAATGGTAGCTCTCGTCTGATGGGCTACCAATTTCAAGA
JMFS155G05+ GGTTCCAAATATAGTCTCTCAAAATGGTAGCTCTCGTCTGATGGGCTACCAATTTCAAGA
JMSF036F13+ GGTTCCAAATATAGTCTCTCAAAATGGTAGCTCTCGTCTGATGGGCTACCAATTTCAAGA
                      ____________________________________________________________
consensus GGTTCCAAATATAGTCTCTCAAAATGGTAGCTCTCGTCTGATGGGCTACCAATTTCAAGA
 
. : . : . : . : . : . :
JMFS136H06+ TTGCCATCCCAGCTTTCAGCCATCTAAATAGTGTGCCCGTCAAAAGGAAGAAATGCTTTT
JMFS162A07+ TTGCCATCCCAGCTTTCAGCCATCTAAATAGTGTGCCCGTCAAAAGGAAGAAATGCTTTT
JMFF038P02+ TTGCCATCCCAGCTTTCAGCCATCTAAATAGTGTGCCCGTCAAAAGGAAGAAATGCTTTT
JMSF039O19+ TTGCCATCCCAGCTTTCAGCCATCTAAATAGTGTGCCCGTCAAAAGGAAGAAATGCTTTT
JMFS155G05+ TTGCCATCCCAGCTTTCAGCCATCTAAATAGTGTGCCCGTCAAAAGGAAGAAATGCTTTT
JMSF036F13+ TTGCCATCCCAGCTTTCAGCCATCTAAATAGTGTGCCCGTCAAAAGGAAGAAATGCTTTT
                      ____________________________________________________________
consensus TTGCCATCCCAGCTTTCAGCCATCTAAATAGTGTGCCCGTCAAAAGGAAGAAATGCTTTT
 
. : . : . : . : . : . :
JMFS136H06+ CCTTGTGGGGTGAATTCTTGACGAAGCTAACTGGGGGAAGAAAAAAAATCAAAACTTCAA
JMFS162A07+ CCTTGTGGGGTGAATTCTTGACGAAGCTAACTGGGGGAAG-AAAAAAATCAAAACTTCAA
JMFF038P02+ CCTTGTGGGGTGAATTCTTGACGAAGCTAACTGGGGGAAGAAAAAAAATCAAAACTTCAA
JMSF039O19+ CCTTGTGGGGTGAATTCTTGACGAAGCTAACTGGGGGAAG-AAAAAAATCAAAACTTCAA
JMFS155G05+ CCTTGTGGGGTGAATTCTTGACGAAGCTAACTGGGGGAAGAAAAAAAATCAAAACTTCAA
JMSF036F13+ CCTTGTGGGGTGAATTCTTGACGAAGCTAACTGGGGGAAGAAAAAAAATCAAAACTTCAA
                      ____________________________________________________________
consensus CCTTGTGGGGTGAATTCTTGACGAAGCTAACTGGGGGAAGAAAAAAAATCAAAACTTCAA
 
. : . : . : . : . : . :
JMFS136H06+ GCTTGCAGCGATGGAGTGCTTGAAGAAAGAA
JMFS162A07+ GCTTGCAGCGATGGAGTGCTTGAAGAAAGAAATGGTAGAGAGGAATTGCAGGAGGAGG
JMFF038P02+ GCTTGCAGCGATGGAGTGCTTGAAGAAAGAAATGGTAGAGAGGAATTGCAGGAGGAGGGT
JMSF039O19+ GCTTGCAGCGATGGAGTGCTTGAAGAAAGAAATGGTAGAGAGGAATTGCAGGAGGAGGGT
JMFS155G05+ GCTTGCAGCGATGGAGTGCTTGAAGAAAGAAATGGTAGAGAGGAATTGCAGGAGGAGGGT
JMSF036F13+ GCTTGCAGCGATGGAGTGCTTGAAGAAAGAAATGGTAGAGAGGAATTGCAGGAGGAGGGT
                      ____________________________________________________________
consensus GCTTGCAGCGATGGAGTGCTTGAAGAAAGAAATGGTAGAGAGGAATTGCAGGAGGAGGGT
 
. : . : . : . : . : . :
JMFF038P02+ TGAATCTTCTTCCATGAAGCGTTTGATTTAGGGTTTGGGTCGGTCCATATGGAGGGC
JMSF039O19+ TGAATCTTCTTCCATGAAGCGTTTGATTTAGGGTTTGGGTCGGTCCATATGGAGGGCAAA
JMFS155G05+ TGAATCTTCTTCCATGAAGCGTTTGATTTAGGGTTTGGGTCGGTCCATATGGAGGGCAAA
JMSF036F13+ TGAATCTTCTTCCATGAAGCGTTTGATTTAGGGTTTGGGTCGGTCCATATGGAGGGCAAA
                      ____________________________________________________________
consensus TGAATCTTCTTCCATGAAGCGTTTGATTTAGGGTTTGGGTCGGTCCATATGGAGGGCAAA
 
. : . : . : . : . : . :
JMSF039O19+ GGGGCAATATGGGAAGAAGGAAGAAGGAAGGAGGAAACGAGCTGGCAACTCCGATCAA
JMFS155G05+ GGGGCAATATGGGAAGAAGGAAGAAGGAAGGAGGAAACGA
JMSF036F13+ GGGGCAATATGGGAAGAAGGAAGAAGGAAGGAGGAAACGAGCTGGCAACTCCGATCAATC
                      ____________________________________________________________
consensus GGGGCAATATGGGAAGAAGGAAGAAGGAAGGAGGAAACGAGCTGGCAACTCCGATCAATC