| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF036E16 | Sequence | 561 | 007059 (9) | pir|T09884|T09884 | 9e-24 | hypothetical protein T22A6.40 - Arabidopsis thaliana>gb:ATCHRIV61_1546304 Arabid | 711 | 021486 | gb:AY087672_1572700 | 3e-18 | Arabidopsis thaliana clone 37543 mRNA, complete sequence. |
| JMFS077B11 | Sequence | 119 | 007059 (9) | ||||||||
| JMSF009D20 | Sequence | 253 | 007059 (9) | 180 | 007059 (9) | ||||||
| JMSF009E20 | Sequence | 441 | 007059 (9) | gb:AY087672_1572700 | 2e-05 | Arabidopsis thaliana clone 37543 mRNA, complete sequence. | 734 | 007059 (9) | gb:AY087672_1572700 | 9e-27 | Arabidopsis thaliana clone 37543 mRNA, complete sequence. |
| JMSF021J23 | Sequence | 692 | 007059 (9) | gb:AY087672_1572700 | 8e-27 | Arabidopsis thaliana clone 37543 mRNA, complete sequence. | 758 | 001804 (183) | sp|P12329|CB21_MAIZE | e-133 | Chlorophyll a-b binding protein 1, chloroplast precursor (LHCII type I CAB-1) (L |
| JMSF035P13 | Sequence | 624 | 007059 (9) | gb:AY087672_1572700 | 9e-21 | Arabidopsis thaliana clone 37543 mRNA, complete sequence. | 680 | 007059 (9) | gb:AY087672_1572700 | 2e-26 | Arabidopsis thaliana clone 37543 mRNA, complete sequence. |
This contig is upended
. : . : . : . : . : . :
rJMSF035P13- TTACAGATCTCTA
rJMSF009D20- TTACAGATCTCTA
rJMSF009E20- ATACAATACAAGCATTACAGATCTCTA
____________________________________________________________
consensus ATACAATACAAGCATTACAGATCTCTA
. : . : . : . : . : . :
rJMSF035P13- ATCCAAATGATATAAATCGAGTTAAAAACAAATACAGATAGATCATAGATGAATATGAAG
rJMSF009D20- ATCCNAATGATATANNTCGAGTTAAAANCAAATNCAGATAGATCNTAGATGAGTATGAAG
rJMSF009E20- ATCCAAATGATATAAATCGAGTTAAAAACAAATACAGATAGATCATAGATGAATATGAAG
JMSF021J23+ CAAATACAGATAGATCATAGATGAATATGAAG
____________________________________________________________
consensus ATCCAAATGATATAAATCGAGTTAAAAACAAATACAGATAGATCATAGATGAATATGAAG
. : . : . : . : . : . :
rJMSF035P13- GAATAATAATAAAAGTGAAGCCCAAATTTTGGTGATTTTTATCACGTTTGTTTGTGACGA
rJMSF009D20- GAATANTANTAANAGTGAAGCCCNNATTTTGGTGATTTTTATCACGTTTGTTTGTGACGA
rJMSF009E20- GAATAATAATAAAAGTGAAGCCCAAATTTTGGTGATTTTTATCACGTTTGTTTGTGACGA
JMSF021J23+ GAATAATAATAAAAGTGAAGCCCAAATTTTGGTGATTTTTATCACGTTTGTTTGTGACGA
____________________________________________________________
consensus GAATAATAATAAAAGTGAAGCCCAAATTTTGGTGATTTTTATCACGTTTGTTTGTGACGA
. : . : . : . : . : . :
rJMSF035P13- TTACTGGAATTCATCTTCTCGTAATACCGGATCGAGAGGAGGGAGAGCGAGAGATTCATT
rJMSF009D20- TTACTGGAATTCATCTTCTCGTAATACCGGATCGAGAGG
rJMSF009E20- TTACTGGAATTCATCTTCTCGTAATACCGGATCGAGAGGAGGGAGAGCGAGAGATTCATT
JMSF021J23+ TTACTGGAATTCATCTTCTCGTAATACCGGATCGAGAGGAGGGAGAGCGAGAGATTCATT
____________________________________________________________
consensus TTACTGGAATTCATCTTCTCGTAATACCGGATCGAGAGGAGGGAGAGCGAGAGATTCATT
. : . : . : . : . : . :
rJMSF035P13- TCGTCGTTTCCCCACCGTGTTTTCCCGGCGGCGAATTTGGCCGACGAAGGCTTTGGAGGC
rJMSF009E20- TCGTCGTTTCCCCACCGTGTTTTCCCGGCGGCGAATTTGGCCGACGAAGGCTTTGGAGGC
JMSF021J23+ TCGTCGTTTCCCCACCGTGTTTTCCCGGCGGNGAATTTGGCCGACGAAGGCTTTGGAGGC
____________________________________________________________
consensus TCGTCGTTTCCCCACCGTGTTTTCCCGGCGGCGAATTTGGCCGACGAAGGCTTTGGAGGC
. : . : . : . : . : . :
rJMSF035P13- GGGGGCAGGCAAGGCCAGGTACATGCCGGCGAGGAGGAGGAAGAGGAGGAGGAGGACGAC
rJMSF009E20- GGGGGCAGGCAAGGCCAGGTACATGCCGGCGAGGAGGAGGAAGAGGAGGAGGAGGACGAC
JMSF021J23+ GGGGGCAGGCAAGGCCAGGTACATGCCGGCGAGGAGGAGGAAGAGGAGGAGGAGGACGAC
JMSF035P13+ GAGGAAGAGGAGGAGGAGGACGAC
____________________________________________________________
consensus GGGGGCAGGCAAGGCCAGGTACATGCCGGCGAGGAGGAGGAAGAGGAGGAGGAGGACGAC
. : . : . : . : . : . :
rJMSF035P13- GACGGTTTAACTAGCGGCCAGAGGTGAAGCGAGTAGAGCCGCCGGAAGCCGCCGAGGGCG
rJMSF009E20- GACGGTTTAACTAGCGGCCAGAGGTGAAGCGAGTAGAGCCGCCGGAAGCCGCCGAGGGCG
JMSF021J23+ GACGGTTTAACTAGCGGCCAGAGGTGAAGCGAGTAGAGCCGCCGGAAGCCGCCGAGGGCG
JMSF035P13+ GACGGTTTAACTAGCGGCCAGAGGTGAAGCGAGTAGAGCCGCCGGAAGCCGCCGAGGGCG
____________________________________________________________
consensus GACGGTTTAACTAGCGGCCAGAGGTGAAGCGAGTAGAGCCGCCGGAAGCCGCCGAGGGCG
. : . : . : . : . : . :
rJMSF035P13- AGGACCACGTTACGGAGCTGCTGCTGTTGCTGATTCCGGCGGGAGCCGTCCTTGAGGCAC
JMFF036E16+ CCGTCCTTGTTGCAC
rJMSF009E20- AGGACCACGTTACGGAGCTGCTGCTGTTGCTGATTCCGGCGGGAGCCGTCCTTGAGGCAC
JMSF021J23+ AGGACCACGTTACGGAGCTGCTGCTGTTGCTGATTCCGGCGGGAGCCGTCCTTGAGGCAC
JMSF035P13+ AGGACCACGTTACGGAGCTGCTGCTGTTGCTGATTCCGGCGGGAGCCGTCCTTGAGGCAC
____________________________________________________________
consensus AGGACCACGTTACGGAGCTGCTGCTGTTGCTGATTCCGGCGGGAGCCGTCCTTGAGGCAC
. : . : . : . : . : . :
rJMSF035P13- ATCAGCTCCCAGAGCCGCTCGTCCTGCGCCGTCCGCTTCCACAGCTTGCTAACGCACGCC
JMFF036E16+ ATCACCTCCCACAACCGCTCGTCCTGCGCCGTCCGGTTCCACTGCTTGCTAACGCACGCC
rJMSF009E20- ATCAGCTCCCAGAGCCGCTCGTCCTGCGCCGTCCGCTTCCACAGCTTGCTAACGCACGCC
JMSF021J23+ ATCAGCTCCCAGAGCCGCTCGTCCTGCGCCGTCCGCTTCCACAGCTTGCTAACGCACGCC
JMSF009E20+ CCACAGCTTGCTAACGCACGCC
JMSF035P13+ ATCAGCTCCCAGAGCCGCTCGTCCTGCGCCGTCCGCTTCCACAGCTTGCTAACGCACGCC
____________________________________________________________
consensus ATCAGCTCCCAGAGCCGCTCGTCCTGCGCCGTCCGCTTCCACAGCTTGCTAACGCACGCC
. : . : . : . : . : . :
rJMSF035P13- GCCCACGCTAGCGTGTGCCAGTCCACGTGTTTCAGCACTTCGTACAGCAAGTTCTCGTCC
JMFF036E16+ GCCCACGCTAACGTGCGCGCGTCGACGTGCTTCAGCACCTCGTACAGCAAGTTCTCGTCC
rJMSF009E20- GCCCACGCTAGCGTGCGCCAGTCCACGTGTTTCAGCACTTCGTACAGCAAGTTCTCGTCC
JMSF021J23+ GCCCACGCTAGCGTGCGCCAGTCCACGTGTTTCAGCACTTCGTACAGCAAGTTCTCGTCC
JMSF009E20+ GCCCACGCTAGCGTGCGCCAGTCCACGTGTTTCAGCACTTCGTACAGCAAGTTCTCGTCC
JMSF035P13+ GCCCACGCTAGCGTGTGCCAGTCCACGTGTTTCAGCACTTCGTACAGCAAGTTCTCGTCC
____________________________________________________________
consensus GCCCACGCTAGCGTGCGCCAGTCCACGTGTTTCAGCACTTCGTACAGCAAGTTCTCGTCC
. : . : . : . : . : . :
rJMSF035P13- AACAACACCGATTCCGTCGGCATCGGTCCCGCCGTCGCCGTCGCCGCTAACGTACGCCCG
JMFF036E16+ ATCAACAC
rJMSF009E20- AACAACACCGATTCCGTCGGCATCGGTCCCGCCGTCGCCGTCGCCGCTAACGTACGCCCG
JMSF021J23+ AACAACACCGATTCCGTCGGCATCGGTCCCGCCGTCGCCGTCGCCGCTAACGTACGCCCG
JMSF009E20+ AACAACACCGATTCCGTCGGCATCGGTCCCGCCGTCGCCGTCGCCGCTAACGTACGCCCG
JMSF035P13+ AACAACACCGATTCCGTCGGCATCGGTCCCGCCGTCGCCGTCGCCGCTAACGTACGCCCG
____________________________________________________________
consensus AACAACACCGATTCCGTCGGCATCGGTCCCGCCGTCGCCGTCGCCGCTAACGTACGCCCG
. : . : . : . : . : . :
rJMSF035P13- GACTCTTTCTCCTCCACCTTCGTCTTCTTCTTCTCCTCCTCCTCCTCCTTCAG
rJMSF009E20- GACTCTTTCTCCTCCACCTTCGTCTTCTTCTTCTCCTCCTCCTCCTCCTTCAGACCGTGG
JMSF021J23+ GACTCTTTCTCCTCCACCTTCGTCTTCTTCTTCTCCTCCTCCTCCTCCTTCAGACCGTGG
JMFS077B11+ TCTTCTTCTTCTCCTCCTCCTCCTCCTTCAGACCGTGG
JMSF009E20+ GACTCTTTCTCCTCCACCTTCGTCTTCTTCTTCTCCTCCTCCTCCTCCTTCAGACCGTGG
JMSF009D20+ CCTTCAGACCGTGG
JMSF035P13+ GACTCTTTCTCCTCCACCTTCGTCTTCTTCTTCTCCTCCTCCTCCTCCTTCAGACCGTGG
____________________________________________________________
consensus GACTCTTTCTCCTCCACCTTCGTCTTCTTCTTCTCCTCCTCCTCCTCCTTCAGACCGTGG
. : . : . : . : . : . :
rJMSF009E20- ATTCCGTCGCCGTCGGGAGTATGGGGCCGCTTCATCGGCAGATCTGA
JMSF021J23+ ATTCCGTCGCCGTCGGGAGTATGGGGCCGCTTCATCGGCAGATCTGAACAAAAATA
JMFS077B11+ ATTCCGTCGCCGTCGGGAGTATGGGGCCGCTTCATCGGCAGATCTGAACAAAAATATAGA
JMSF009E20+ ATTCCGTCGCCGTCGGGAGTATGGGGCCGCTTCATCGGCAGATCTGAACAAAAATATAGA
JMSF009D20+ ATTCCGTCGCCGTCGGGAGTATGGGGCCGCTTCATCGGCAGATCTGAACAAAAATATAGA
JMSF035P13+ ATTCCGTCGCCGTCGGGAGTATGGGGCCGCTTCATCGGCAGATCTGAACAAAAATATAGA
____________________________________________________________
consensus ATTCCGTCGCCGTCGGGAGTATGGGGCCGCTTCATCGGCAGATCTGAACAAAAATATAGA
. : . : . : . : . : . :
JMFS077B11+ GGGAAAAAGGTGCAACTCCGA
JMSF009E20+ GGGAAAAAGGTGCAACTCCGAGGTTAGGTATATAATTTGAAGAAAATAGGGATTGCTGGA
JMSF009D20+ GGGAAAAAGGTGCAACTCCGAGGTTAGGTATATAATTTGAAGAAAATAGGGATTGCTGGA
JMSF035P13+ GGGAAAAAGGTGCAACTCCGAGGTTAGGTATATAATTTGAAGAAAATAGGGATTGCTGGA
____________________________________________________________
consensus GGGAAAAAGGTGCAACTCCGAGGTTAGGTATATAATTTGAAGAAAATAGGGATTGCTGGA
. : . : . : . : . : . :
JMSF009E20+ AAATGGGATGTAGTGGTTCCACAATTACGCAGCATCACATGCATATGGGGCTTTCTTTAT
JMSF009D20+ AAATGGGATGTAGTGGTTCCACAATTACGCAGCATCACATGCATATGGGGCTTTCTTTAT
JMSF035P13+ AAATGGGATGTAGTGGTTCCACAATTACGCAGCATCACATGCATATGGGGCTTTCTTTAT
____________________________________________________________
consensus AAATGGGATGTAGTGGTTCCACAATTACGCAGCATCACATGCATATGGGGCTTTCTTTAT
. : . : . : . : . : . :
JMSF009E20+ CATTATCGACAATCAGAAAGTTGGAGAAATGAATGCCGTTTCCGGGAGTGGATTCCTCC
JMSF009D20+ CATTATCGACAATCAGAAAGTTGGAGAAATGAATGCCGTTTCCGGGAGTGGATTCCTCC
JMSF035P13+ CATTATCGACAATCAGAAAGTTGGAGAAATGAATGCCGTTTCCGGGAGTGGATTCCTCCA
____________________________________________________________
consensus CATTATCGACAATCAGAAAGTTGGAGAAATGAATGCCGTTTCCGGGAGTGGATTCCTCCA