Previous Contig 006809:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015O08Sequence521006809 (7)gb:AP004751_18443673e-25Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P049192009761 (4)
JMFF033E15Sequence541006809 (7)gb:AP004751_18443673e-29Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P049737009761 (4)gb:AP004751_18443671e-27Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P049
JMFF036N14Sequence548006809 (7)gb:AP004751_18443677e-34Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P049749009761 (4)pir|H84807|H848077e-42probable phospholipid cytidylyltransferase [imported] - Arabidopsis thaliana>gb:
JMFS049E08Sequence602006809 (7)gb:AP004751_18443671e-46Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P049
JMSF005E20Sequence448006809 (7)gb:AP004751_18443671e-13Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P049549010020 (3)gb:BT015761_16423793e-41Arabidopsis thaliana At5g48370 mRNA, complete cds.>gb:BT020202_1642597 Arabidops
JMSF011F02Sequence375006809 (7)
JMSF032E08Sequence692006809 (7)gb:AP004751_18443672e-30Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P049738009761 (4)pir|H84807|H848075e-48probable phospholipid cytidylyltransferase [imported] - Arabidopsis thaliana>gb:

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS049E08+ GCATAAACTCTTCTGTGATTTCATAGGGAGCATTGGCAATGACCTCATCCACCCACT
                      ____________________________________________________________
consensus GCATAAACTCTTCTGTGATTTCATAGGGAGCATTGGCAATGACCTCATCCACCCACT
 
. : . : . : . : . : . :
JMFF036N14+ CTAACAAGAGTCAACCTCTCTTCCATGGGTAAAACTGGGGGACCTTTGTTGA
JMFF033E15+ AAACTGGGGGACCTTTGTTGA
JMFF015O08+ A
JMFS049E08+ TCAAACCACTAACAAGAGTCAACCTCTCTTCCATGGGTAAAACTGGGGGACCTTTGTTGA
JMSF032E08+ TTCCATGGGTAAAACTGGGGGACCTTTGTTGA
                      ____________________________________________________________
consensus TCAAACCACTAACAAGAGTCAACCTCTCTTCCATGGGTAAAACTGGGGGACCTTTGTTGA
 
. : . : . : . : . : . :
JMFF036N14+ CTATAATTTCCTCATCACTGACAACTCCAACAATCAATTCATCTCCCAATGCCTTGGCTT
JMFF033E15+ CTATAATTTCCTCATCACTGACAACTCCAACAATCAATTCATCTCCCAATGCCTTGGCTT
JMFF015O08+ CTATAATTTCCTCATCACTGACAACTCCAACAATCAATTCATCTCCCAATGCCTTGGCTT
JMFS049E08+ CTATAATTTCCTCATCACTGACAACTCCAACAATCAATTCATCTCCCAATGCCTTGGCTT
JMSF032E08+ CTATAATTTCCTCATCACTGACAACTCCAACAATCAATTCATCTCCCAATGCCTTGGCTT
                      ____________________________________________________________
consensus CTATAATTTCCTCATCACTGACAACTCCAACAATCAATTCATCTCCCAATGCCTTGGCTT
 
. : . : . : . : . : . :
JMFF036N14+ GCCTCAAGGCATTGGCATGGCCATAATGCATCATATCAAAACACCCGTCCATATAGACAC
JMFF033E15+ GCCTCAAGGCATTGGCATGGCCATAATGCATCATATCAAAACACCCGTCCATATAGACAC
JMFF015O08+ GCCTCAAGGCATTGGCATGGCCATAATGCATCATATCAAAACACCCGTCCATATAGACAC
JMSF005E20+ GGCATGGCCATAATGCATCATATCAAAACACCCGTCCATATAGACAC
JMFS049E08+ GCCTCAAGGCATTGGCATGGCCATAATGCATCATATCAAAACACCCGTCCATATAGACAC
JMSF032E08+ GCCTCAAGGCATTGGCATGGCCATAATGCATCATATCAAAACACCCGTCCATATAGACAC
                      ____________________________________________________________
consensus GCCTCAAGGCATTGGCATGGCCATAATGCATCATATCAAAACACCCGTCCATATAGACAC
 
. : . : . : . : . : . :
JMFF036N14+ GGACACGTCTCTTCGCACGTTTTTTCTTGTGAAAAACACTCAAATCAGGTAACAGATAGG
JMFF033E15+ GGACACGTCTCTTCGCACGTTTTTTCTTGTGAAAAACACTCAAATCAGGTAACAGATAGG
JMFF015O08+ GGACACGTCTCTTCGCACGTTTTTTCTTGTGAAAAACACTCAAATCAGGTAACAGATAGG
JMSF005E20+ GGACACGTCTCTTCGCACGTTTTTTCTTGTGAAAAACACTCAAATCAGGTAACAGATAGG
JMFS049E08+ GGACACGTCTCTTCGCACGTTTTTTCTTGTGAAAAACACTCAAATCAGGTAACAGATAGG
JMSF032E08+ GGACACGTCTCTTCGCACGTTTTTTCTTGTGAAAAACACTCAAATCAGGTAACAGATAGG
                      ____________________________________________________________
consensus GGACACGTCTCTTCGCACGTTTTTTCTTGTGAAAAACACTCAAATCAGGTAACAGATAGG
 
. : . : . : . : . : . :
JMFF036N14+ GTAAAGTAGGAACATAGATCCTGCCAAAGTAGTTAGTGGACAGCCCAAGTAAGGCTGCCG
JMFF033E15+ GTAAAGTAGGAACATAGATCCTGCCAAAGTAGTTAGTGGACAGCCCAAGTAAGGCTGCCG
JMFF015O08+ GTAAAGTAGGAACATAGATCCTGCCAAAGTAGTTAGTGGACAGCCCAAGTAAGGCTGCCG
JMSF005E20+ GTAAAGTAGGAACATAGATCCTGCCAAAGTAGTTAGTGGACAGCCCAAGTAAGGCTGCCG
JMFS049E08+ GTAAAGTAGGAACATAGATCCTGCCAAAGTAGTTAGTGGACAGCCCAAGTAAGGCTGCCG
JMSF032E08+ GTAAAGTAGGAACATAGATCCTGCCAAAGTAGTTAGTGGACAGCCCAAGTAAGGCTGCCG
                      ____________________________________________________________
consensus GTAAAGTAGGAACATAGATCCTGCCAAAGTAGTTAGTGGACAGCCCAAGTAAGGCTGCCG
 
. : . : . : . : . : . :
JMFF036N14+ TAAGCATTATACCACCAAACAGATGAGGGTAGTAACACCCCCCATCCCTGATCCAGCTAT
JMFF033E15+ TAAGCATTATACCACCAAACAGATGAGGGTAGTAACACCCCCCATCCCTGATCCAGCTAT
JMFF015O08+ TAAGCATTATACCACCAAACAGATGAGGGTAGTAACACCCCCCATCCCTGATCCAGCTAT
JMSF005E20+ TAAGCATTATACCACCAAACAGATGAGGGTAGTAACACCCCCCATCCCTGATCCAGCTAT
JMFS049E08+ TAAGCATTATACCACCAAACAGATGAGGGTAGTAACACCCCCCATCCCTGATCCAGCTAT
JMSF011F02+ TCCCTGATCCAGCTAT
JMSF032E08+ TAAGCATTATACCACCAAACAGATGAGGGTAGTAACACCCCCCATCCCTGATCCAGCTAT
                      ____________________________________________________________
consensus TAAGCATTATACCACCAAACAGATGAGGGTAGTAACACCCCCCATCCCTGATCCAGCTAT
 
. : . : . : . : . : . :
JMFF036N14+ TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
JMFF033E15+ TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
JMFF015O08+ TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
JMSF005E20+ TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
JMFS049E08+ TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
JMSF011F02+ TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
JMSF032E08+ TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
                      ____________________________________________________________
consensus TGCTCTCAAACTCCATTGATCCCCACCCTTTTCTCCTTTCTCAGGCCTCTTTTATACTCT
 
. : . : . : . : . : . :
JMFF036N14+ CACTAAAAGAGGCAAGAAAGACCCTGAAAGTTGTAAGGTGAGGAAATGGGATTGAGAATT
JMFF033E15+ CACTAAAAGAGGCAAGAAAGACCCTGAAAGTTGTAAGGTGAGGAAATGGGATTGAGAATT
JMFF015O08+ CACTAAAAGAGGCAAGAAAGACCCTGAAAGTTGTAAGGTGAGGAAATGGGATTGAGAATT
JMSF005E20+ CACTAAAAGAGGCAAGAAAGACCCTGAAAGTTGTAAGGTGAGGAAATGGGATTGAGAATT
JMFS049E08+ CACTAAAAGAGGCAAGAAAGACCCTGAAAGTTGTAAGGTGAGGAAATGGGATTGAGAATT
JMSF011F02+ CACTAAAAGAGGCAAGAAAGACCCTGAAGGTTGTAAGGTGAGGAAATGGGATTGAGAATT
JMSF032E08+ CACTAAAAGAGGCAAGAAAGACCCTGAAAGTTGTAAGGTGAGGAAATGGGATTGAGAATT
                      ____________________________________________________________
consensus CACTAAAAGAGGCAAGAAAGACCCTGAAAGTTGTAAGGTGAGGAAATGGGATTGAGAATT
 
. : . : . : . : . : . :
JMFF036N14+ CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
JMFF033E15+ CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
JMFF015O08+ CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
JMSF005E20+ CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
JMFS049E08+ CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
JMSF011F02+ CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
JMSF032E08+ CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
                      ____________________________________________________________
consensus CCTGGAAAACACAGATGAATCGGGGATCTCTGAGCTATATGGGTGCGAGTGAACCTCAAT
 
. : . : . : . : . : . :
JMFF036N14+ GTCT
JMFF033E15+ GTCT
JMFF015O08+ GTCT
JMSF005E20+ GTCT
JMFS049E08+ GTCTT
JMSF011F02+ GTCTGCGCGATGAAACGAATAACAAAAGAAATTAAAATTGCACGATTTATATGGTGCAAT
JMSF032E08+ GTCTGCGCGATGAAACGAATAACAAAAGAAATTAAAATTGCACGATTTATATGGTGCAAT
                      ____________________________________________________________
consensus GTCTGCGCGATGAAACGAATAACAAAAGAAATTAAAATTGCACGATTTATATGGTGCAAT
 
. : . : . : . : . : . :
JMSF011F02+ GTAACATTGAAGTTAACGCCACACTAGAAAGAAGACGATATTCTTCGACTGGGGAAAAGG
JMSF032E08+ GTAACATTGAAGTTAACGCCACACTAGAAAGAAGACGATATTCTTCGACTGGGGAAAAGG
                      ____________________________________________________________
consensus GTAACATTGAAGTTAACGCCACACTAGAAAGAAGACGATATTCTTCGACTGGGGAAAAGG
 
. : . : . : . : . : . :
JMSF011F02+ GTGTCAGATCGAATCTTTTACCTTTCTTCCTCTCCCTTAATGGCGAAGGAGAGAAAC
JMSF032E08+ GTGTCAGATCGAATCTTTTACCTTTCTTCCTCTCCCTTAATGGCGAAGGAGAGAAACGTC
                      ____________________________________________________________
consensus GTGTCAGATCGAATCTTTTACCTTTCTTCCTCTCCCTTAATGGCGAAGGAGAGAAACGTC