clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF027A13 | Sequence | 542 | 006744 (5) | gb:AY087647_1572676 | 1e-62 | Arabidopsis thaliana clone 37331 mRNA, complete sequence. | 643 | 006744 (5) | pir|T00593|T02480 | 2e-62 | sec13-related protein At2g30050 - Arabidopsis thaliana>gb:AC004165_1531519 Arabi |
JMFN010O10 | Sequence | 617 | 006744 (5) | pir|T00593|T02480 | 2e-88 | sec13-related protein At2g30050 - Arabidopsis thaliana>gb:AC004165_1531519 Arabi | |||||
JMFN018B15 | Sequence | 610 | 006744 (5) | pir|T00593|T02480 | 4e-89 | sec13-related protein At2g30050 - Arabidopsis thaliana>gb:AC004165_1531519 Arabi | |||||
JMSF031I07 | Sequence | 677 | 006744 (5) | gb:AY087647_1572676 | 2e-81 | Arabidopsis thaliana clone 37331 mRNA, complete sequence. | 393 | 023480 |
This contig is upended
. : . : . : . : . : . :
JMFN018B15+ AAAGATGTCTTGGATAGAGATATAGACTAACTGGAAGTCT
rJMFF027A13- TCT
JMFN010O10+ AAAGGAGAAGTCGGCAAAAGATGTCTTGGATAGAGATATAGACTAACTGGAAGTCT
____________________________________________________________
consensus AAAGGAGAAGTCGGCAAAAGATGTCTTGGATAGAGATATAGACTAACTGGAAGTCT
. : . : . : . : . : . :
JMFN018B15+ ATTGGTCAACAGTTGTGACCTGTTGCCACTCCCCGTCAACTGCTTCATTCCATAGTGTGA
rJMFF027A13- ATTGGTCAACAGTTGTGACCTGTTGCCACTCCCCGTCAACTGCTTCATTCCATAGTGTGA
JMFN010O10+ ATTGGTCAACAGTTGTGACCTGTTGCCACTCCCCGTCAACTGCTTCATTCCATAGTGTGA
____________________________________________________________
consensus ATTGGTCAACAGTTGTGACCTGTTGCCACTCCCCGTCAACTGCTTCATTCCATAGTGTGA
. : . : . : . : . : . :
JMFN018B15+ CATTGTTGTCCCCAGAAGCTACGGCTAACAGGTTTCCAGTCAAAGACCATGAGACCCTCC
rJMFF027A13- CATTGTTGTCCCCAGAANCTACGGCTAACNGGTTTCCAGTCAAAGACCATGANACCCTCC
JMFN010O10+ CATTGTTGTCCCCAGAAGCTACGGCTAACAGGTTTCCAGTCAAAGACCATGAGACCCTCC
____________________________________________________________
consensus CATTGTTGTCCCCAGAAGCTACGGCTAACAGGTTTCCAGTCAAAGACCATGAGACCCTCC
. : . : . : . : . : . :
JMFN018B15+ AAACGGGTGTGTTAAAGTCATACAAAACCTTTCCTTCCCACTGATCTCCTTCTTTTGCCA
rJMFF027A13- AAACGGGTGTGTTAAAGTCATACAAAACCTTTCCTTCCCACTGATCTCCTTCTTTTGCCA
JMFN010O10+ AAACGGGTGTGTTAAAGTCATACAAAACCTTTCCTTCCCACTGATCTCCTTCTTTTGCCA
____________________________________________________________
consensus AAACGGGTGTGTTAAAGTCATACAAAACCTTTCCTTCCCACTGATCTCCTTCTTTTGCCA
. : . : . : . : . : . :
JMFN018B15+ CAGTCCATATCACAACTTTACCATCCTCTGAAGCACTTGCAATTGTTGATTTTGGAAGCC
rJMFF027A13- CAGTCCATATCACAACTTTACCATCCTCTGAAGCACTTGCAATTGTTGATTTTGGAAGCC
JMFN010O10+ CAGTCCATATCACAACTTTACCATCCTCTGAAGCACTTGCAATTGTTGATTTTGGAAGCC
____________________________________________________________
consensus CAGTCCATATCACAACTTTACCATCCTCTGAAGCACTTGCAATTGTTGATTTTGGAAGCC
. : . : . : . : . : . :
JMFN018B15+ CCAAATTGGGTGCCCACGCAACATCCCTCACCCAGTTAGTGTGCATCTGAAGGGCAGGGA
rJMFF027A13- CCAAATTGGGTGCCCACGCAACATCCCTCACCCAGNTAGTGTGCATCTGAAGGGCAGGGA
JMFN010O10+ CCAAATTGGGTGCCCACGCAACATCCCTCACCCAGTTAGTGTGCATCTGAAGGGCAGGGA
____________________________________________________________
consensus CCAAATTGGGTGCCCACGCAACATCCCTCACCCAGTTAGTGTGCATCTGAAGGGCAGGGA
. : . : . : . : . : . :
JMFN018B15+ AGCAATCCATCTTCCAAACACCATTATAAAGCTTCCACACCTTCACAGTGTTATCACACC
rJMFF027A13- AGCAATCCATCTTCCAAACACCATTATAAAGCTTCCACACCTTCACAGTGTTATCACACC
JMFN010O10+ AGCAATCCATCTTCCAAACACCATTATAAAGCTTCCACACCTTCACAGTGTTATCACACC
____________________________________________________________
consensus AGCAATCCATCTTCCAAACACCATTATAAAGCTTCCACACCTTCACAGTGTTATCACACC
. : . : . : . : . : . :
JMFN018B15+ CAGCTGATGCAAGCTTCTGAACAGGGTCATGTAAACCAGAACCAACTAAAGCACCGGGAG
rJMFF027A13- CANCTGATGCAAGCTTCTGAACAGGGTCNTGTAAACCAGAACCANCTAAAGCACCGGGAG
JMFN010O10+ CAGCTGATGCAAGCTTCTGAACAGGGTCATGTAAACCAGAACCAACTAAAGCACCGGGAG
JMSF031I07+ AACTAAAGCACCGGGAG
____________________________________________________________
consensus CAGCTGATGCAAGCTTCTGAACAGGGTCATGTAAACCAGAACCAACTAAAGCACCGGGAG
. : . : . : . : . : . :
JMFN018B15+ CCATTGAAGGTGCCCATGAAACTGCAGTTACTCCAATAGGATGGGCCTGGTCTATTCTTG
rJMFF027A13- CCATTGA
JMFN010O10+ CCATTGAAGGTGCCCATGAAACTGCAGTTACTCCAATAGGATGGGCCTGGTCTATTCTTG
JMSF031I07+ CCATTGAAGGTGCCCATGAAACTGCAGTTACTCCAATAGGATGGGCCTGGTCTATTCTTG
____________________________________________________________
consensus CCATTGAAGGTGCCCATGAAACTGCAGTTACTCCAATAGGATGGGCCTGGTCTATTCTTG
. : . : . : . : . : . :
JMFN018B15+ CAGTGTCCCAACCACCATCTGACCTCGCGGTGTAAACAGAGATGTTCCCATCAGATGATC
JMFN010O10+ CAGTGTCCCAACCACCATCTGACCTCGCGGTGTAAACAGAGATGTTCCCATTAGATGATC
JMFF027A13+ TAAACAGAGATGTTCCCATCAGATGATC
JMSF031I07+ CAGTGTCCCAACCACCATCTGACCTCGCGGTGTAAACAGAGATATTCCCATCAGATGATC
____________________________________________________________
consensus CAGTGTCCCAACCACCATCTGACCTCGCGGTGTAAACAGAGATGTTCCCATCAGATGATC
. : . : . : . : . : . :
JMFN018B15+ CACATGCCAAGCAAAGCCCAA
JMFN010O10+ CACATGCCAAGCAAAGCCCAA
JMFF027A13+ CACATGCCAAGCAAAGCCCAAGTTCATGAGGAGCCCACGAAATAGAATTAACTGAAGATT
JMSF031I07+ CACATGCCAAGCAAAGCCCAAGTTCATGAGGAGCCCACGAAATAGAATTAACTGAAGATT
____________________________________________________________
consensus CACATGCCAAGCAAAGCCCAAGTTCATGAGGAGCCCACGAAATAGAATTAACTGAAGATT
. : . : . : . : . : . :
JMFF027A13+ TGTGATCATTGAAAACATGAGCTTGTGTCCACTCATTTTGATTCCCTTCCTTCCAAACAA
JMSF031I07+ TGTGATCATTGAAAACATGAGCTTGTGTCCACTCATTTTGATTCCCTTCCTTCCAAACAA
____________________________________________________________
consensus TGTGATCATTGAAAACATGAGCTTGTGTCCACTCATTTTGATTCCCTTCCTTCCAAACAA
. : . : . : . : . : . :
JMFF027A13+ TGACTTTACCATCAAATGAACAGGAAGCCAGTAGTGAACCAAATTTAGGGTGTGCCCATG
JMSF031I07+ TGACTTTACCATCAAATGAACAGGAAGCCAGTAGTGAACCAAATTTAGGGTGTGCCCATG
____________________________________________________________
consensus TGACTTTACCATCAAATGAACAGGAAGCCAGTAGTGAACCAAATTTAGGGTGTGCCCATG
. : . : . : . : . : . :
JMFF027A13+ AAACCTGCCAAACTGGACCATGATGACCGGCCAGAGTAGCAAGGTGCTGTGAAGTAGAGT
JMSF031I07+ AAACCTGCCAAACTGGACCATGATGACCGGCCAGAGTAGCAAGGTGCTGTGAAGTAGAGT
____________________________________________________________
consensus AAACCTGCCAAACTGGACCATGATGACCGGCCAGAGTAGCAAGGTGCTGTGAAGTAGAGT
. : . : . : . : . : . :
JMFF027A13+ TGTTGCTCACACCAATTATCTTGATGGAGGCATCAGATGAAGCTGTCGCCACACGTTTTC
JMSF031I07+ TGTTGCTCACACCAATTATCTTGATGGAGGCATCAGATGAAGCTGTCGCCACACGTTTTC
____________________________________________________________
consensus TGTTGCTCACACCAATTATCTTGATGGAGGCATCAGATGAAGCTGTCGCCACACGTTTTC
. : . : . : . : . : . :
JMFF027A13+ CATAGTAATCCATAGACACATCGTGAACTGTGTCACTGTGCCCTGTTTCAATTTTCTGTG
JMSF031I07+ CATAGTAATCCATAGACACATCGTGAACTGTGTCACTGTGCCCTGTTTCAATTTTCTGTG
____________________________________________________________
consensus CATAGTAATCCATAGACACATCGTGAACTGTGTCACTGTGCCCTGTTTCAATTTTCTGTG
. : . : . : . : . : . :
JMFF027A13+ CAGGCATCTTTCCTT
JMSF031I07+ CAGGCATCTTTCCTTCCTTGTCACTACTACGTATGAATGTATGATCACCCTGGAACAGAG
____________________________________________________________
consensus CAGGCATCTTTCCTTCCTTGTCACTACTACGTATGAATGTATGATCACCCTGGAACAGAG
. : . : . : . : . : . :
JMSF031I07+ AATGTAACCGGGGATCGGCAGATCAGGTCAGAGGAAAACGCTGCGAACAGGAGAGGGAGA
____________________________________________________________
consensus AATGTAACCGGGGATCGGCAGATCAGGTCAGAGGAAAACGCTGCGAACAGGAGAGGGAGA
. : . : . : . : . : . :
JMSF031I07+ AACAGTCGCTACCCGGGAAACCTGAACACAGAGCAAACTATAGCCGACAATCAAATCCTC
____________________________________________________________
consensus AACAGTCGCTACCCGGGAAACCTGAACACAGAGCAAACTATAGCCGACAATCAAATCCTC