clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN014I10 | Sequence | 619 | 006667 (7) | gb:AY094032_1575538 | 2e-50 | Arabidopsis thaliana At1g23740/F5O8_27 mRNA, complete cds.>gb:AF411799_1797263 A | |||||
JMSF030H01 | Sequence | 666 | 006667 (7) | gb:AY094032_1575538 | 3e-52 | Arabidopsis thaliana At1g23740/F5O8_27 mRNA, complete cds.>gb:AF411799_1797263 A | 760 | 006667 (7) | gb:AY094032_1575538 | 4e-41 | Arabidopsis thaliana At1g23740/F5O8_27 mRNA, complete cds.>gb:AF411799_1797263 A |
JMSF038G13 | Sequence | 692 | 006667 (7) | gb:AY094032_1575538 | 7e-57 | Arabidopsis thaliana At1g23740/F5O8_27 mRNA, complete cds.>gb:AF411799_1797263 A | 885 | 006667 (7) | gb:AY085513_1570582 | 1e-77 | Arabidopsis thaliana clone 155143 mRNA, complete sequence. |
JMSF038N08 | Sequence | 689 | 006667 (7) | gb:AY094032_1575538 | 2e-56 | Arabidopsis thaliana At1g23740/F5O8_27 mRNA, complete cds.>gb:AF411799_1797263 A | 928 | 006667 (7) | gb:AY085513_1570582 | 1e-78 | Arabidopsis thaliana clone 155143 mRNA, complete sequence. |
This contig is upended
. : . : . : . : . : . :
rJMSF030H01- ATT
____________________________________________________________
consensus ATT
. : . : . : . : . : . :
rJMSF030H01- TTCTTAACTTACACTACAAATGCAATCTTTGAAAACAAGTAATAATGATGATATATATAA
____________________________________________________________
consensus TTCTTAACTTACACTACAAATGCAATCTTTGAAAACAAGTAATAATGATGATATATATAA
. : . : . : . : . : . :
rJMSF030H01- AACCACCATAGACATATGGAGGTCATGGATGGTAACGGGAAGTTTTCAAAAATTTCTGAT
____________________________________________________________
consensus AACCACCATAGACATATGGAGGTCATGGATGGTAACGGGAAGTTTTCAAAAATTTCTGAT
. : . : . : . : . : . :
rJMSF030H01- TAACAACCTCTCAGGAAGAATACAATAAACATATTAGAAAAAAGTATCATATAGGCCATC
rJMSF038G13- ATAAACATATTAGAAAAAAGTATCATATAGGCCATC
rJMSF038N08- ACCTCTCAGGAAGAATACAATAAACATATTAGAAAAAAGTATCATATAGGCCATC
____________________________________________________________
consensus TAACAACCTCTCAGGAAGAATACAATAAACATATTAGAAAAAAGTATCATATAGGCCATC
. : . : . : . : . : . :
rJMSF030H01- AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
rJMSF038G13- AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
rJMSF038N08- AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
____________________________________________________________
consensus AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
. : . : . : . : . : . :
rJMSF030H01- AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
rJMSF038G13- AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
rJMSF038N08- AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
____________________________________________________________
consensus AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
. : . : . : . : . : . :
rJMSF030H01- AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
rJMSF038G13- AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
rJMSF038N08- AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
____________________________________________________________
consensus AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
. : . : . : . : . : . :
rJMSF030H01- AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
rJMSF038G13- AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
rJMSF038N08- AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
____________________________________________________________
consensus AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
. : . : . : . : . : . :
rJMSF030H01- TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
rJMSF038G13- TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
rJMSF038N08- TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
____________________________________________________________
consensus TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
. : . : . : . : . : . :
rJMSF030H01- AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
rJMSF038G13- AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
rJMSF038N08- AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
____________________________________________________________
consensus AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
. : . : . : . : . : . :
rJMSF030H01- TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
rJMSF038G13- TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
rJMSF038N08- TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
____________________________________________________________
consensus TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
. : . : . : . : . : . :
rJMSF030H01- CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
rJMSF038G13- CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
rJMSF038N08- CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
____________________________________________________________
consensus CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
. : . : . : . : . : . :
rJMSF030H01- CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
rJMSF038G13- CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
rJMSF038N08- CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
____________________________________________________________
consensus CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
. : . : . : . : . : . :
rJMSF030H01- TAGTCNATAGCCNAATCAGCGCCTAAGCTTTTCA
rJMSF038G13- TAGTCAATAGCCAAATCAGCGCCTAAGCTTTTCAACAACTCCAACTTGCCAGTGCTGGAT
rJMSF038N08- TAGTCAATAGCCAAATCAGCGCCTAAGCTTTTCAACAACTCCAACTTGCCAGTGCTGGAT
____________________________________________________________
consensus TAGTCAATAGCCAAATCAGCGCCTAAGCTTTTCAACAACTCCAACTTGCCAGTGCTGGAT
. : . : . : . : . : . :
rJMSF038G13- GTAGCTGCAACTTTTGAAGCACCAAATACATGCTTTGCGAGCTGAATGACGAGAGATCCA
rJMSF038N08- GTAGCTGCAACTTTTGAAGCACCAAATACATGCTTTGCGAGCTGAATGACGAGAGATCCA
____________________________________________________________
consensus GTAGCTGCAACTTTTGAAGCACCAAATACATGCTTTGCGAGCTGAATGACGAGAGATCCA
. : . : . : . : . : . :
rJMSF038G13- ACTCCTCCTGCACCACCCAAGACGAGGATGGATTTTCCAGAAGAAAATTCTGCCCTTTCA
rJMSF038N08- ACTCCTCCTGCACCACCCAAGACGAGGATGGATTTTCCAGAAGAAAATTCTGCCCTTTCA
____________________________________________________________
consensus ACTCCTCCTGCACCACCCAAGACGAGGATGGATTTTCCAGAAGAAAATTCTGCCCTTTCA
. : . : . : . : . : . :
rJMSF038G13- AGACCTTCGTAGGCGGTCTCTATGGCAAGAGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
rJMSF038N08- AGACCTTCGTAGGCGGTCTCTATGGCAAGAGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
JMSF038N08+ AGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
JMSF038G13+ AGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
JMSF030H01+ ACTAAGA
____________________________________________________________
consensus AGACCTTCGTAGGCGGTCTCTATGGCAAGAGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
. : . : . : . : . : . :
rJMSF038G13- TTCTTTGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
rJMSF038N08- TTCTTTGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMSF038N08+ TTCTTNGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMFN014I10+ TTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMSF038G13+ TTCTTNGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMSF030H01+ TTCTTNGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
____________________________________________________________
consensus TTCTTTGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
. : . : . : . : . : . :
rJMSF038G13- AACTGCTTG
rJMSF038N08- AACTGCTTGGGGTCCTTCCAATGCTTTC
JMSF038N08+ AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
JMFN014I10+ AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
JMSF038G13+ AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
JMSF030H01+ AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
____________________________________________________________
consensus AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
. : . : . : . : . : . :
JMSF038N08+ TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
JMFN014I10+ TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
JMSF038G13+ TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
JMSF030H01+ TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
____________________________________________________________
consensus TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
. : . : . : . : . : . :
JMSF038N08+ TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
JMFN014I10+ TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
JMSF038G13+ TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
JMSF030H01+ TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
____________________________________________________________
consensus TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
. : . : . : . : . : . :
JMSF038N08+ AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
JMFN014I10+ AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
JMSF038G13+ AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
JMSF030H01+ AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGACCATCTTGTATCTGAGGCAC
____________________________________________________________
consensus AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
. : . : . : . : . : . :
JMSF038N08+ TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
JMFN014I10+ TGCAATACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
JMSF038G13+ TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
JMSF030H01+ TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
____________________________________________________________
consensus TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
. : . : . : . : . : . :
JMSF038N08+ ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
JMFN014I10+ ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
JMSF038G13+ ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
JMSF030H01+ ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
____________________________________________________________
consensus ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
. : . : . : . : . : . :
JMSF038N08+ ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
JMFN014I10+ ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
JMSF038G13+ ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
JMSF030H01+ ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
____________________________________________________________
consensus ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
. : . : . : . : . : . :
JMSF038N08+ GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
JMFN014I10+ GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
JMSF038G13+ GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
JMSF030H01+ GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
____________________________________________________________
consensus GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
. : . : . : . : . : . :
JMSF038N08+ GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
JMFN014I10+ GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
JMSF038G13+ GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
JMSF030H01+ GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
____________________________________________________________
consensus GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
. : . : . : . : . : . :
JMSF038N08+ TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTC
JMFN014I10+ TTTTCTGCTTCTCTTCTCAGCTCTTCTGT
JMSF038G13+ TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTC
JMSF030H01+ TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTCCTCAA
____________________________________________________________
consensus TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTCCTCAA