Previous Contig 006667:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-                                                                   ATT
                      ____________________________________________________________
consensus                                                                      ATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          TTCTTAACTTACACTACAAATGCAATCTTTGAAAACAAGTAATAATGATGATATATATAA
                      ____________________________________________________________
consensus             TTCTTAACTTACACTACAAATGCAATCTTTGAAAACAAGTAATAATGATGATATATATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          AACCACCATAGACATATGGAGGTCATGGATGGTAACGGGAAGTTTTCAAAAATTTCTGAT
                      ____________________________________________________________
consensus             AACCACCATAGACATATGGAGGTCATGGATGGTAACGGGAAGTTTTCAAAAATTTCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          TAACAACCTCTCAGGAAGAATACAATAAACATATTAGAAAAAAGTATCATATAGGCCATC
rJMSF038G13-                                  ATAAACATATTAGAAAAAAGTATCATATAGGCCATC
rJMSF038N08-               ACCTCTCAGGAAGAATACAATAAACATATTAGAAAAAAGTATCATATAGGCCATC
                      ____________________________________________________________
consensus             TAACAACCTCTCAGGAAGAATACAATAAACATATTAGAAAAAAGTATCATATAGGCCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
rJMSF038G13-          AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
rJMSF038N08-          AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
                      ____________________________________________________________
consensus             AAACTTTAGATTGTGGGTACGAGTAGAGGCCATCAAACTTTAGATTGTGGGTACGAGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
rJMSF038G13-          AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
rJMSF038N08-          AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
                      ____________________________________________________________
consensus             AGGCATGGGTGTGTCTATATCCGTGCCTACCAGGCAAAGCTAGCGTAGAACAATGAGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
rJMSF038G13-          AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
rJMSF038N08-          AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
                      ____________________________________________________________
consensus             AATATAAACTGAGTCCTCTACACAGCAAAACTTTTTCTCCCATCCACTTAGTATATCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
rJMSF038G13-          AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
rJMSF038N08-          AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
                      ____________________________________________________________
consensus             AATTTGTTAAGAACAATAAGTGTAAGTAATAGCTCTCAGGGAATAGGATGTATAACAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
rJMSF038G13-          TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
rJMSF038N08-          TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
                      ____________________________________________________________
consensus             TTCCCAGTGGCACGGCCAGTTTCAAGGTAAGAAAATGCTTCTGCAACCTTGTCAAATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
rJMSF038G13-          AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
rJMSF038N08-          AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
                      ____________________________________________________________
consensus             AATGGACCCTTGGGGTCTATCACTGGCTTCACCTTCCCACTTTCTAGGAAAGGGTTGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
rJMSF038G13-          TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
rJMSF038N08-          TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
                      ____________________________________________________________
consensus             TTCTTCAACACTTCTCCGTTGGATGTGACTACGAACCTGAAACCGGGGGGCGTGACTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
rJMSF038G13-          CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
rJMSF038N08-          CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
                      ____________________________________________________________
consensus             CCGGTTAGCACCACCACGCTCCCGCCTTCCTTCACCACCTTAACTGCCTTCTCTCCCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
rJMSF038G13-          CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
rJMSF038N08-          CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
                      ____________________________________________________________
consensus             CCGACTGTATCATAGACCACATCAAACTTGTCTGGTATGTCTTCAAAGTTGTCCTTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030H01-          TAGTCNATAGCCNAATCAGCGCCTAAGCTTTTCA                          
rJMSF038G13-          TAGTCAATAGCCAAATCAGCGCCTAAGCTTTTCAACAACTCCAACTTGCCAGTGCTGGAT
rJMSF038N08-          TAGTCAATAGCCAAATCAGCGCCTAAGCTTTTCAACAACTCCAACTTGCCAGTGCTGGAT
                      ____________________________________________________________
consensus             TAGTCAATAGCCAAATCAGCGCCTAAGCTTTTCAACAACTCCAACTTGCCAGTGCTGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038G13-          GTAGCTGCAACTTTTGAAGCACCAAATACATGCTTTGCGAGCTGAATGACGAGAGATCCA
rJMSF038N08-          GTAGCTGCAACTTTTGAAGCACCAAATACATGCTTTGCGAGCTGAATGACGAGAGATCCA
                      ____________________________________________________________
consensus             GTAGCTGCAACTTTTGAAGCACCAAATACATGCTTTGCGAGCTGAATGACGAGAGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038G13-          ACTCCTCCTGCACCACCCAAGACGAGGATGGATTTTCCAGAAGAAAATTCTGCCCTTTCA
rJMSF038N08-          ACTCCTCCTGCACCACCCAAGACGAGGATGGATTTTCCAGAAGAAAATTCTGCCCTTTCA
                      ____________________________________________________________
consensus             ACTCCTCCTGCACCACCCAAGACGAGGATGGATTTTCCAGAAGAAAATTCTGCCCTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038G13-          AGACCTTCGTAGGCGGTCTCTATGGCAAGAGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
rJMSF038N08-          AGACCTTCGTAGGCGGTCTCTATGGCAAGAGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
JMSF038N08+                                        AGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
JMSF038G13+                                        AGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
JMSF030H01+                                                                ACTAAGA
                      ____________________________________________________________
consensus             AGACCTTCGTAGGCGGTCTCTATGGCAAGAGGAAGAGCAGCAGCCTGTTCAAAACTAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038G13-          TTCTTTGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
rJMSF038N08-          TTCTTTGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMSF038N08+           TTCTTNGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMFN014I10+                    TTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMSF038G13+           TTCTTNGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
JMSF030H01+           TTCTTNGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
                      ____________________________________________________________
consensus             TTCTTTGGCTTCAAAGCCAGCAGTTTCTCCTCAACTGCAGTGTACTGACCTAATGAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038G13-          AACTGCTTG                                                   
rJMSF038N08-          AACTGCTTGGGGTCCTTCCAATGCTTTC                                
JMSF038N08+           AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
JMFN014I10+           AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
JMSF038G13+           AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
JMSF030H01+           AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
                      ____________________________________________________________
consensus             AACTGCTT-GGGTCCTTCCAATGCTTTCTCATTTATGTTTCCATAAACTTCGTCACCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
JMFN014I10+           TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
JMSF038G13+           TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
JMSF030H01+           TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
                      ____________________________________________________________
consensus             TCTTAGGCCTTTTACTTGACTACCAACTTGGATTACTACACCAGCAACATCATAGCCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
JMFN014I10+           TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
JMSF038G13+           TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
JMSF030H01+           TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
                      ____________________________________________________________
consensus             TACAGTAGGAAGAGGCGAATCAGTGGCCTTGAACTTGCCCTGTCTGCGCTTGAAATCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
JMFN014I10+           AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
JMSF038G13+           AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
JMSF030H01+           AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGACCATCTTGTATCTGAGGCAC
                      ____________________________________________________________
consensus             AGGATTGAGAGCCGCAGCAGCAACTTTGATCAACACCTGATCATCTTGTATCTGAGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
JMFN014I10+           TGCAATACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
JMSF038G13+           TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
JMSF030H01+           TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
                      ____________________________________________________________
consensus             TGCAACACTGGGTTCCACCTTCAAAACATCAACACCTCCATACTCTCCATAAGTCCAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
JMFN014I10+           ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
JMSF038G13+           ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
JMSF030H01+           ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
                      ____________________________________________________________
consensus             ATTCATCTCAAAGGGAAAGAATAATGTGGCTGTAGAGGCCTCAGCTGATGCAGCCTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
JMFN014I10+           ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
JMSF038G13+           ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
JMSF030H01+           ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
                      ____________________________________________________________
consensus             ACTCGCCAAGACTCTGAAAGATAACTGAGTCCTCTGAACCCAAGAATCTGCAGCTTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
JMFN014I10+           GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
JMSF038G13+           GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
JMSF030H01+           GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
                      ____________________________________________________________
consensus             GCTCCTGCAGTGAAGTTTGAACACAGCAGAAAGACAGGATGGAGAGTGGGGAGGGTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
JMFN014I10+           GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
JMSF038G13+           GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
JMSF030H01+           GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
                      ____________________________________________________________
consensus             GGTTCTTCTCACTGGAAGAGTTGTGGAGGAGAGCAGTGCTTCCATGATTTTTTACTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF038N08+           TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTC     
JMFN014I10+           TTTTCTGCTTCTCTTCTCAGCTCTTCTGT                               
JMSF038G13+           TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTC     
JMSF030H01+           TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTCCTCAA
                      ____________________________________________________________
consensus             TTTTCTGCTTCTCTTCTCAGCTCTTCTGTGTTATGGCAGACTGTGATTGCTTGTCCTCAA