Previous Contig 006614:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014N24Sequence548006614 (3)794010871 (3)gb:BC019429_20929115e-65Mus musculus cDNA clone MGC:30371 IMAGE:5149920, complete cds.
JMFF049B01Sequence647006614 (3)635010871 (3)gb:AY024357_15590103e-18Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
JMSF029L18Sequence688006614 (3)745010871 (3)gb:BC019429_20929114e-54Mus musculus cDNA clone MGC:30371 IMAGE:5149920, complete cds.

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF029L18+ CTGATGATATAGGGCTTCAGACGAGGGA
                      ____________________________________________________________
consensus CTGATGATATAGGGCTTCAGACGAGGGA
 
. : . : . : . : . : . :
JMFF049B01+ TCAACCCAGAAAGAAATGGGTCAGCAACAGCTGGTCCAATATCAACACCAGGAGGA
JMSF029L18+ CGCTTCAACCCAGAAAGAAATGGGTCAGCAACAGCTGGTCCAATATCAACACCAGGAGGA
                      ____________________________________________________________
consensus CGCTTCAACCCAGAAAGAAATGGGTCAGCAACAGCTGGTCCAATATCAACACCAGGAGGA
 
. : . : . : . : . : . :
JMFF049B01+ CCAGACCACGATGACTGAGAAGCCAATTGAGGGGCTGTAGGAATTCTAGTGCCAGCAGAG
JMFF014N24+ CCAGCAGAG
JMSF029L18+ CCAGACCACGATGACTGAGAAGCCAATTGAGGGGCTGTAGGAATTCTAGTGCCAGCAGAG
                      ____________________________________________________________
consensus CCAGACCACGATGACTGAGAAGCCAATTGAGGGGCTGTAGGAATTCTAGTGCCAGCAGAG
 
. : . : . : . : . : . :
JMFF049B01+ GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
JMFF014N24+ GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
JMSF029L18+ GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
                      ____________________________________________________________
consensus GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
 
. : . : . : . : . : . :
JMFF049B01+ TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
JMFF014N24+ TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
JMSF029L18+ TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
                      ____________________________________________________________
consensus TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
 
. : . : . : . : . : . :
JMFF049B01+ TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
JMFF014N24+ TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
JMSF029L18+ TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
                      ____________________________________________________________
consensus TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
 
. : . : . : . : . : . :
JMFF049B01+ TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
JMFF014N24+ TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
JMSF029L18+ TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
                      ____________________________________________________________
consensus TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
 
. : . : . : . : . : . :
JMFF049B01+ ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
JMFF014N24+ ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
JMSF029L18+ ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
                      ____________________________________________________________
consensus ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
 
. : . : . : . : . : . :
JMFF049B01+ TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAA
JMFF014N24+ TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAG
JMSF029L18+ TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAA
                      ____________________________________________________________
consensus TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAA
 
. : . : . : . : . : . :
JMFF049B01+ TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
JMFF014N24+ TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
JMSF029L18+ TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
                      ____________________________________________________________
consensus TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
 
. : . : . : . : . : . :
JMFF049B01+ ATGATAATTCTGATTTATTATAAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
JMFF014N24+ ATGATAATTCTGATTTATTATAAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
JMSF029L18+ ATGATAATTCTGATTTATTATTAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
                      ____________________________________________________________
consensus ATGATAATTCTGATTTATTATAAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
 
. : . : . : . : . : . :
JMFF049B01+ CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCGGTTCTCCTCTC
JMFF014N24+ CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCTGTTTTCCTCTCAGTTT
JMSF029L18+ CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCTGTTTTCCTCTCAGTTTTCTC
                      ____________________________________________________________
consensus CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCTGTTTTCCTCTCAGTTTTCTC