Previous Contig 006328:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022H20Sequence496006328 (3)gb:AB022215_15150344e-36Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCB17.>gb:AY050770_156691009264 (4)gb:AY060551_15648603e-13Arabidopsis thaliana AT4g14900/dl3490c mRNA, complete cds.
JMSF025M20Sequence583006328 (3)gb:AB022215_15150346e-36Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCB17.>gb:AY050770_156736009264 (4)gb:AY060551_15648601e-27Arabidopsis thaliana AT4g14900/dl3490c mRNA, complete cds.
JMSF044E02Sequence567006328 (3)gb:AB022215_15150346e-36Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCB17.>gb:AY050770_156815009264 (4)gb:AB022215_15150347e-36Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MCB17.>gb:AY050770_156

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF022H20+ CTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
JMSF044E02+ TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
JMSF025M20+ CTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
                      ____________________________________________________________
consensus TTCTTCCGAACGATCACGAAACTCCAGAAGCTTCTAGAGTCCATC
 
. : . : . : . : . : . :
JMFF022H20+ TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
JMSF044E02+ TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
JMSF025M20+ TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
                      ____________________________________________________________
consensus TGAACACAAAAAGACCTCAACTTTAACAGCAATCCGGCAGAATTATCCACCTCCGGTTGC
 
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JMFF022H20+ TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
JMSF044E02+ TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
JMSF025M20+ TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
                      ____________________________________________________________
consensus TCCAAACCCTCGCCCTCCGATTCAGCGCCGTGGCTCTTCAATTCCACGAGCGCGGCTTTG
 
. : . : . : . : . : . :
JMFF022H20+ CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
JMSF044E02+ CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
JMSF025M20+ CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
                      ____________________________________________________________
consensus CTGTTATCGCTGAGCTTCTGGAGAGCAATGGAGATGGACGCGGAGATAGAGCTCTCGCGT
 
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JMFF022H20+ TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
JMSF044E02+ TTCTCCAGAGCCTCAAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
JMSF025M20+ TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
                      ____________________________________________________________
consensus TTCTCCAGAGCCTCGAGGGAGTGTTTAGTTTCAGAGTCTAGGGTTTGGAGTTTGGTTTTG
 
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JMFF022H20+ AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
JMSF044E02+ AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
JMSF025M20+ AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
                      ____________________________________________________________
consensus AGGGCTTCGGACTTCTTCAAGAGGTCCTGCTCGAGGGAGGTGAAGTGATCAGAGAGCTCT
 
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JMFF022H20+ TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
JMSF044E02+ TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
JMSF025M20+ TTCCACAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
                      ____________________________________________________________
consensus TTCCATAAGAGAGTGCAGCTGGTCATCAGAGACGTCTGCCGCTGAAACTCATCGAAACTG
 
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JMFF022H20+ AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
JMSF044E02+ AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
JMSF025M20+ AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
                      ____________________________________________________________
consensus AGCGGCGTTGACTGAGAGCACTCGCCGGGATCGGCGATTAAACCCATTTTGGCCGATTCA
 
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JMFF022H20+ CGGCGATGGAAGAGAGAGAAATGGGAATGGT
JMSF044E02+ CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
JMSF025M20+ CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
                      ____________________________________________________________
consensus CGGCGATGGAAGAGAGAGAAATGGGAATGGTAGTGAGATGAAGTTTGGTGGAGTGGCGAT
 
. : . : . : . : . : . :
JMSF044E02+ AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGAC
JMSF025M20+ AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGACAGACTGGTTGGGAATGTTC
                      ____________________________________________________________
consensus AAAGCGACAGAGGATGAAGGAGTGCTGACATGTACCCAGACAGACTGGTTGGGAATGTTC