clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF051P04 | Sequence | 505 | 006266 (3) | gb:AB061795_1522088 | 2e-14 | Bruguiera gymnorhiza bg55 mRNA, complete cds. | 637 | 021949 | gb:AY087183_1572217 | 0.011 | Arabidopsis thaliana clone 32599 mRNA, complete sequence. |
JMSF025A21 | Sequence | 535 | 006266 (3) | gb:AB061795_1522088 | 2e-04 | Bruguiera gymnorhiza bg55 mRNA, complete cds. | 728 | 013132 (2) | gb:AB061795_1522088 | 5e-29 | Bruguiera gymnorhiza bg55 mRNA, complete cds. |
JMSF037P05 | Sequence | 650 | 006266 (3) | gb:AB061795_1522088 | 4e-32 | Bruguiera gymnorhiza bg55 mRNA, complete cds. | 666 | 013132 (2) | gb:AB061795_1522088 | 9e-30 | Bruguiera gymnorhiza bg55 mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
JMSF037P05+ CTCTGCAGCCAGCAATACGG
____________________________________________________________
consensus CTCTGCAGCCAGCAATACGG
. : . : . : . : . : . :
JMSF037P05+ GAACCATGTTTTGAATCTGGCTCAAGCTAACCTCCAGTAAGCTCCACGACTTTTGACACC
____________________________________________________________
consensus GAACCATGTTTTGAATCTGGCTCAAGCTAACCTCCAGTAAGCTCCACGACTTTTGACACC
. : . : . : . : . : . :
JMFF051P04+ TTTCAGAGCCAAGTAGAGTTTACTTGATTCACTGCACGGCT
JMSF037P05+ TCGAGAGTATAACATCTCCTTTCAGAGCCAAGTAGAGTTTACTTGATTCACTGCACTGCT
____________________________________________________________
consensus TCGAGAGTATAACATCTCCTTTCAGAGCCAAGTAGAGTTTACTTGATTCACTGCACTGCT
. : . : . : . : . : . :
JMFF051P04+ TAAGTATTAACTTCGCCTTCTCAATGGCTTTGTTCAATAAGCAAAGCGCCTCTATCCCTG
JMSF037P05+ TAAGTATTAACTTCGCCTTCTCAATGGCTTTGTTCAATAAGCAAAGCGCCTCTATCCCTG
____________________________________________________________
consensus TAAGTATTAACTTCGCCTTCTCAATGGCTTTGTTCAATAAGCAAAGCGCCTCTATCCCTG
. : . : . : . : . : . :
JMFF051P04+ ATCTGCATCGAGGCCGGGATGCTTCTATTCGCTGGAAGTATTTTTGAAGCTCTACTTACT
JMSF037P05+ ATCTGCATCGAGGCCGGGATGCTTCTA-TCGCTGGAAGTATTTTTGAAGCTCTACTTACT
JMSF025A21+ GCATCGAGGCCGGGATGCTTCTA-TCGCTGGAAGTATTTTTGAAGCTCTACTTACT
____________________________________________________________
consensus ATCTGCATCGAGGCCGGGATGCTTCTA-TCGCTGGAAGTATTTTTGAAGCTCTACTTACT
. : . : . : . : . : . :
JMFF051P04+ GAGTTGATTAATTCTGTGCACATTAACCGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
JMSF037P05+ GAGTTGATTAATTCTGTGCACATTAACCGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
JMSF025A21+ GAGTTGATTAATTCTGTGCACATTAACTGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
____________________________________________________________
consensus GAGTTGATTAATTCTGTGCACATTAACCGATGCACCTTAATGGAGTTAGGAGTTGGAAGT
. : . : . : . : . : . :
JMFF051P04+ GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACGGAAGAACAGATAACTTA
JMSF037P05+ GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACAGAAGAACAGATAACTTA
JMSF025A21+ GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACAGAAGAACAGATAACTTA
____________________________________________________________
consensus GCTTCAGTAACAACTGTCTTCATACTCAAAGGAAATGGAAACAGAAGAACAGATAACTTA
. : . : . : . : . : . :
JMFF051P04+ TCT
JMSF037P05+ TCTAGCAAAAAGGTAGAGTTATCAAGACCACCAAATAACTACACTTCTGGAAACAGAAAC
JMSF025A21+ TCTAGCAAAAAGGTAGAGTTATCAAGACCACCAAATAACTACACTTCTGGAAACAGAAAC
____________________________________________________________
consensus TCTAGCAAAAAGGTAGAGTTATCAAGACCACCAAATAACTACACTTCTGGAAACAGAAAC
. : . : . : . : . : . :
JMSF037P05+ CCAAACCCAATGGCCAATTCCCTTCTGGAACCACACCCACCTTGAAAAGCTGCAAGCTTT
JMSF025A21+ CCAAACCCAATGGCCAATTCCCTTCTGGAACCACACCCACCTTGAAAAGCTGCAAGCTTT
____________________________________________________________
consensus CCAAACCCAATGGCCAATTCCCTTCTGGAACCACACCCACCTTGAAAAGCTGCAAGCTTT
. : . : . : . : . : . :
JMSF037P05+ CCAGCAAACTTGAATAGAATATTACAAATGACAACTTTCAAGAAAAGCTCCTCCTTCTTC
JMSF025A21+ CCAGCAAACTTGAATAGAATATTACAAATGACAACTTTCAAGAAAAGCTCCTCCTTCTTC
____________________________________________________________
consensus CCAGCAAACTTGAATAGAATATTACAAATGACAACTTTCAAGAAAAGCTCCTCCTTCTTC
. : . : . : . : . : . :
JMSF037P05+ TTCTTCTTCTTCTTTTCTTTTCCGAACAAAGGAACCCGATTCTGAACTGAGATTACAATT
JMSF025A21+ TTCTTCTTCTTCTTTTCTTTTCCGAACAAAGGAACCCGATTCTGAACTGAGATTACAATT
____________________________________________________________
consensus TTCTTCTTCTTCTTTTCTTTTCCGAACAAAGGAACCCGATTCTGAACTGAGATTACAATT
. : . : . : . : . : . :
JMSF037P05+ TCAAACACAAATCAACCTTATTGAGACCA
JMSF025A21+ TCAAACACAAATCAACCTTATTGAGACCACAGAAGACCAAGGAATGATGGATGCACGCAC
____________________________________________________________
consensus TCAAACACAAATCAACCTTATTGAGACCACAGAAGACCAAGGAATGATGGATGCACGCAC
. : . : . : . : . : . :
JMSF025A21+ AAATGTACAAGCATTTACAAACAGCATTAAAGAGATACCTAACCACCCAGTCACATCTTC
____________________________________________________________
consensus AAATGTACAAGCATTTACAAACAGCATTAAAGAGATACCTAACCACCCAGTCACATCTTC