Previous Contig 006174:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS007H02Sequence509006174 (5)pir|T05209|T052094e-09hypothetical protein F24J7.50 - Arabidopsis thaliana>gb:ATCHRIV51_1545789 Arabid
JMFS040D12Sequence623006174 (5)pir|T05209|T052092e-20hypothetical protein F24J7.50 - Arabidopsis thaliana>gb:ATCHRIV51_1545789 Arabid
JMFS124E12Sequence562006174 (5)pir|T05209|T052094e-15hypothetical protein F24J7.50 - Arabidopsis thaliana>gb:ATCHRIV51_1545789 Arabid
JMSF023M23Sequence596006174 (5)pir|T05209|T052091e-15hypothetical protein F24J7.50 - Arabidopsis thaliana>gb:ATCHRIV51_1545789 Arabid738013172 (2)gb:OSJN00184_16963642e-23Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083I11, complete seque
JMSF038I13Sequence650006174 (5)pir|T05209|T052097e-24hypothetical protein F24J7.50 - Arabidopsis thaliana>gb:ATCHRIV51_1545789 Arabid939013172 (2)gb:OSJN00184_16963641e-38Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083I11, complete seque

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS040D12+ TGAACGTGGCACCCTCTTCCAATTGAA
JMSF038I13+ GGTTCGGAAGGGGCACGCAGCCTTGAACGTGGCACCCTCTTCCAATTGAA
                      ____________________________________________________________
consensus GGTTCGGAAGGGGCACGCAGCCTTGAACGTGGCACCCTCTTCCAATTGAA
 
. : . : . : . : . : . :
JMFS040D12+ AATCCTCCTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCNC
JMSF038I13+ AATCCTCCTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
JMFS124E12+ CTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
JMSF023M23+ CTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
                      ____________________________________________________________
consensus AATCCTCCTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
 
. : . : . : . : . : . :
JMFS007H02+ GCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMFS040D12+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMSF038I13+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMFS124E12+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMSF023M23+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
                      ____________________________________________________________
consensus CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
 
. : . : . : . : . : . :
JMFS007H02+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMFS040D12+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMSF038I13+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMFS124E12+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMSF023M23+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
                      ____________________________________________________________
consensus ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
 
. : . : . : . : . : . :
JMFS007H02+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMFS040D12+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMSF038I13+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMFS124E12+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMSF023M23+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
                      ____________________________________________________________
consensus GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
 
. : . : . : . : . : . :
JMFS007H02+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMFS040D12+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMSF038I13+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMFS124E12+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMSF023M23+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
                      ____________________________________________________________
consensus ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
 
. : . : . : . : . : . :
JMFS007H02+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMFS040D12+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMSF038I13+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMFS124E12+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMSF023M23+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
                      ____________________________________________________________
consensus TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
 
. : . : . : . : . : . :
JMFS007H02+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMFS040D12+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMSF038I13+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMFS124E12+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMSF023M23+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
                      ____________________________________________________________
consensus CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
 
. : . : . : . : . : . :
JMFS007H02+ CATAGA--CGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMFS040D12+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMSF038I13+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMFS124E12+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMSF023M23+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
                      ____________________________________________________________
consensus CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
 
. : . : . : . : . : . :
JMFS007H02+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMFS040D12+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMSF038I13+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMFS124E12+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMSF023M23+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
                      ____________________________________________________________
consensus GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
 
. : . : . : . : . : . :
JMFS007H02+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCG
JMFS040D12+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGT
JMSF038I13+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGT
JMFS124E12+ GGAGGAGTTAGAGAGAGAGAGAATGTGGT
JMSF023M23+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGTGAATCCTC
                      ____________________________________________________________
consensus GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGTGAATCCTC