Previous Contig 006122:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016L15Sequence512006122 (3)gb:AY087343_15723754e-17Arabidopsis thaliana clone 34418 mRNA, complete sequence.787012224 (3)gb:AP004774_18448345e-52Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P043
JMSF021N12Sequence652006122 (3)gb:AY087343_15723756e-42Arabidopsis thaliana clone 34418 mRNA, complete sequence.742012224 (3)gb:AP004774_18448347e-42Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P043
JMSF023C07Sequence655006122 (3)gb:AY087343_15723751e-42Arabidopsis thaliana clone 34418 mRNA, complete sequence.810012224 (3)gb:AP004774_18448343e-55Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P043

Alignment

This contig is upended


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JMSF021N12+ TCTGCAACTAACACCTCGTGTCCCCTATCCGCACATATATTGATAAGTGGAGCA
JMSF023C07+ ATCTGCAACTAACACCTCGTGTCCCCTATCCGCACATATATTGATAAGTGGAGCA
                      ____________________________________________________________
consensus ATCTGCAACTAACACCTCGTGTCCCCTATCCGCACATATATTGATAAGTGGAGCA
 
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JMSF021N12+ CTAATATCACATCCAATAAATAAACAATTTGGATTCAACCCTAAATATTTGCCATTTCCA
JMSF023C07+ CTAATATCACATCCAATAAATAAACAATTTGGATTCAACCCTAAATATTTGCCATTTCCA
                      ____________________________________________________________
consensus CTAATATCACATCCAATAAATAAACAATTTGGATTCAACCCTAAATATTTGCCATTTCCA
 
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JMSF021N12+ CAGCCCGCATCCAAAATAAGTGAACCCACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
JMSF016L15+ ACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
JMSF023C07+ CAGCCCGCATCCAAAATAAGTGAACCCACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
                      ____________________________________________________________
consensus CAGCCCGCATCCAAAATAAGTGAACCCACAGGCAATGAATTCAAGAAAGCAGAAACTTTC
 
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JMSF021N12+ GGCCACTTGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
JMSF016L15+ GGCCACTNGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
JMSF023C07+ GGCCACTTGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
                      ____________________________________________________________
consensus GGCCACTTGGCAAACCTAGTGGAACTGAAATGGGGAGCAATTGCATCATAAACTCGATGA
 
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JMSF021N12+ ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
JMSF016L15+ ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
JMSF023C07+ ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
                      ____________________________________________________________
consensus ACATACTTTTTTTCAATTTCCGGGGTCGATTGAACATTTGAGGAAGTATCTTTCTTATCC
 
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JMSF021N12+ GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
JMSF016L15+ GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
JMSF023C07+ GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
                      ____________________________________________________________
consensus GAGCTCACAGAAACTGGTCGTAGCACACAAGACTCTCTGTCAGATTCAGAAGCATACAAT
 
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JMSF021N12+ CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
JMSF016L15+ CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
JMSF023C07+ CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
                      ____________________________________________________________
consensus CTAGAACCACCATCAATTCCAACTTCTCTCATTGTTCTAAAACAGCCTTGATTGCCAATG
 
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JMSF021N12+ GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
JMSF016L15+ GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
JMSF023C07+ GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
                      ____________________________________________________________
consensus GTATTATTACCAACAATGATAGGCCGCCCAATGTCACAAAACCCTCCTCTCGAATACAAT
 
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JMSF021N12+ GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
JMSF016L15+ GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
JMSF023C07+ GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
                      ____________________________________________________________
consensus GCTATAGATCGTAAAGCACCTATAAGCATAACAACTATACAAGTATCTCCATATAGAGAC
 
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JMSF021N12+ AGTCTCAGGCTTTCAGCGGTCCTTCACTACGA-TTTGAGGCAAGTGGGGTCATCATCCAC
JMSF016L15+ AGTCTCAGGCTTTCAGCGGTCCTTCACTACGATTTTGAGGCAAGTGGGGTCATCATCCAC
JMSF023C07+ AGTCTCAGGCTTTCAGCGGTCCTTCACTACGATTTTGAGGCAAGTGGGGTCATCATCCAC
                      ____________________________________________________________
consensus AGTCTCAGGCTTTCAGCGGTCCTTCACTACGATTTTGAGGCAAGTGGGGTCATCATCCAC
 
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JMSF021N12+ TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACC
JMSF016L15+ TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACC
JMSF023C07+ TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACCTCT
                      ____________________________________________________________
consensus TACTAAACCTGTTTCTGGGAGTTACTCCGTAGATCAGTGAGAGACATTATAGGGACCTCT