Previous Contig 006025:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS122G09Sequence565006025 (4)
JMSF021N20Sequence673006025 (4)727013277 (4)gb:AC097277_17365092e-44Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence.
JMSF040G02Sequence652006025 (4)852013277 (4)gb:AP003240_18260305e-56Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P040
JMSF050H04Sequence682006025 (4)743013277 (4)gb:AC097277_17365097e-45Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence.

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF040G02+ TCCG
JMSF050H04+ TCGATCCAACAAGTCCTCACAAACTCCG
                      ____________________________________________________________
consensus TCGATCCAACAAGTCCTCACAAACTCCG
 
. : . : . : . : . : . :
JMSF040G02+ AGACTGTTGTTAATCAAATGCAGATCCATAACACTTGGACCATCATCATTTAAAACTCCC
JMSF050H04+ AGACTGTTGTTAATCAAATGCAGATCCATAACACTTGGACCATCATCATTTAAAACTCCC
                      ____________________________________________________________
consensus AGACTGTTGTTAATCAAATGCAGATCCATAACACTTGGACCATCATCATTTAAAACTCCC
 
. : . : . : . : . : . :
JMSF040G02+ GTGAGCCCGTTTTGATTCACTGAAGTTTGGCTAATTCTCAGGTTTTCGATCAGAACGGGA
JMSF050H04+ GTGAGCCCGTTTTGATTCACTGAAGTTTGGCTAATTCTCAGGTTTTCGATCAGAACGGGA
                      ____________________________________________________________
consensus GTGAGCCCGTTTTGATTCACTGAAGTTTGGCTAATTCTCAGGTTTTCGATCAGAACGGGA
 
. : . : . : . : . : . :
JMSF040G02+ TCCAGAAAATCCGATACAGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
JMSF050H04+ TCCAGAAAATCCGATACAGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
JMFS122G09+ AGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
                      ____________________________________________________________
consensus TCCAGAAAATCCGATACAGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
 
. : . : . : . : . : . :
JMSF040G02+ CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
JMSF050H04+ CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
JMFS122G09+ CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
                      ____________________________________________________________
consensus CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
 
. : . : . : . : . : . :
JMSF040G02+ CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
JMSF050H04+ CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
JMFS122G09+ CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
JMSF021N20+ ACCATATAAATTT
                      ____________________________________________________________
consensus CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
 
. : . : . : . : . : . :
JMSF040G02+ TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
JMSF050H04+ TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
JMFS122G09+ TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
JMSF021N20+ TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
                      ____________________________________________________________
consensus TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
 
. : . : . : . : . : . :
JMSF040G02+ CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
JMSF050H04+ CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
JMFS122G09+ CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
JMSF021N20+ CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
                      ____________________________________________________________
consensus CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
 
. : . : . : . : . : . :
JMSF040G02+ AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
JMSF050H04+ AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
JMFS122G09+ AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
JMSF021N20+ AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
                      ____________________________________________________________
consensus AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
 
. : . : . : . : . : . :
JMSF040G02+ TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
JMSF050H04+ TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
JMFS122G09+ TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
JMSF021N20+ TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
                      ____________________________________________________________
consensus TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
 
. : . : . : . : . : . :
JMSF040G02+ ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
JMSF050H04+ ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
JMFS122G09+ ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
JMSF021N20+ ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
                      ____________________________________________________________
consensus ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
 
. : . : . : . : . : . :
JMSF040G02+ T
JMSF050H04+ T
JMFS122G09+ T
JMSF021N20+ TGCAGTTATCATGAAGAGCAGAGATTTTACTGGAGTTCAAATTCTAGATATACCAAATTC
                      ____________________________________________________________
consensus TGCAGTTATCATGAAGAGCAGAGATTTTACTGGAGTTCAAATTCTAGATATACCAAATTC
 
. : . : . : . : . : . :
JMSF021N20+ AAGAAAATTCAAGAACCCAGTTCATATCCTGGAACATTTGACAATGGAAAAAAAATATAA
                      ____________________________________________________________
consensus AAGAAAATTCAAGAACCCAGTTCATATCCTGGAACATTTGACAATGGAAAAAAAATATAA
 
. : . : . : . : . : . :
JMSF021N20+ TCTTTAAGCATAAACACACACATTGATACAATCAAAATGGGAAAAACTGAGCATAATTAG
                      ____________________________________________________________
consensus TCTTTAAGCATAAACACACACATTGATACAATCAAAATGGGAAAAACTGAGCATAATTAG
 
. : . : . : . : . : . :
JMSF021N20+ AAATGCTCAAAATAATAAGCTAAAGCAATATTCTCTAACAGCAAAAGGGAATTAAATAAA
                      ____________________________________________________________
consensus AAATGCTCAAAATAATAAGCTAAAGCAATATTCTCTAACAGCAAAAGGGAATTAAATAAA
 
. : . : . : . : . : . :
JMSF021N20+ GCAGAAAGATGAAAACTTTATCCACAAAGAACACATGAAAATTGAAGGTACCTTACACAG
                      ____________________________________________________________
consensus GCAGAAAGATGAAAACTTTATCCACAAAGAACACATGAAAATTGAAGGTACCTTACACAG
 
. : . : . : . : . : . :
JMSF021N20+ AGCAGGCAGGAGAAACACTTGGTTTGAAACTATGGAAATGAAGCTAAGTATGTTTGTGTC
                      ____________________________________________________________
consensus AGCAGGCAGGAGAAACACTTGGTTTGAAACTATGGAAATGAAGCTAAGTATGTTTGTGTC