clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN005I03 | Sequence | 491 | 005843 (4) | pir|T47746|T47746 | 1e-31 | hypothetical protein F18O21.250 - Arabidopsis thaliana>gb:ATF18O21_1549219 Arabi | |||||
JMFN036L21 | Sequence | 625 | 005843 (4) | pir|T47746|T47746 | 1e-45 | hypothetical protein F18O21.250 - Arabidopsis thaliana>gb:ATF18O21_1549219 Arabi | |||||
JMSF019L10 | Sequence | 546 | 005843 (4) | gb:AP003230_1825751 | 1e-35 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P003 | 749 | 005843 (4) | pir|T47746|T47746 | 5e-46 | hypothetical protein F18O21.250 - Arabidopsis thaliana>gb:ATF18O21_1549219 Arabi |
This contig is upended
. : . : . : . : . : . :
JMFN005I03- GAGAGAACTAGTCTCGAGXXXXXXXXXXXXXXXXXXXXXGATACAACATAAAAGGTATT
____________________________________________________________
consensus GAGAGAACTAGTCTCGAGNNNNNNNNNNNNNNNNNNNNNGATACAACATAAAAGGTATT
. : . : . : . : . : . :
JMFN005I03- GAATGGTATAATACTAAAATGTTCTACAAGCCTTTGTATTGCATTGTGTCGATTGACAAG
rJMSF019L10- TGTTCTACAAGCCTTTGTATTGCATTGTGTCGATTGACAAG
____________________________________________________________
consensus GAATGGTATAATACTAAAATGTTCTACAAGCCTTTGTATTGCATTGTGTCGATTGACAAG
. : . : . : . : . : . :
JMFN005I03- CAAACATATATACCTGAATTGATATGTAGCACAAACTAACAAAAGAGAAACAAAAATTTT
JMFN036L21+ CATATATACCTGAATGNATATGTAGCACAAACTAACAAAAGAGAAACAAAAATTTT
rJMSF019L10- CAAACATATATACCTGAATTGATATGTAGCACAAACTAACAAAAGAGAAACAAAAATTTT
____________________________________________________________
consensus CAAACATATATACCTGAATTGATATGTAGCACAAACTAACAAAAGAGAAACAAAAATTTT
. : . : . : . : . : . :
JMFN005I03- CATGTTTTCAGAGTGGTGTTCTTGATGATGATTCATGAGAAGAGTTTGGTAAAGAAGTTG
JMFN036L21+ CATGTTTTCAGAGTGGTGTTCTTGATGATGATTCATGAGAAGAGTTTGGTAAAGAAGTTG
rJMSF019L10- CATGTTTTCAGAGTGGTGTTCTTGATGATGATTCATGAGAAGAGTTTGGTAAAGAAGTTG
____________________________________________________________
consensus CATGTTTTCAGAGTGGTGTTCTTGATGATGATTCATGAGAAGAGTTTGGTAAAGAAGTTG
. : . : . : . : . : . :
JMFN005I03- CCAGAAGTGGCTTTCTTCTCCAGGCATGCAACATGGGCATATCTTCCAAGCTTGTCTACT
JMFN036L21+ CCAGAAGTGGCTTTCTTCTCCAGGCATGCAACATGGGCATATCTTCCAAGCTTGTCTACT
rJMSF019L10- CCAGAAGTGGCTTTCTTCTCCAGGCATGCAACATGGGCATATCTTCCAAGCTTGTCTACT
JMSF019L10+ TCTACT
____________________________________________________________
consensus CCAGAAGTGGCTTTCTTCTCCAGGCATGCAACATGGGCATATCTTCCAAGCTTGTCTACT
. : . : . : . : . : . :
JMFN005I03- TGCCTTGCTTCTCCCTTTGTGTCCTTCTTGCAGATTTTGCATGTCTTGTCAACCCATCCC
JMFN036L21+ TGCCTTGCTTCTCCCTTTGTGTCCTTCTTGCAGATTTTGCATGTCTTGTCAACCCATCCC
rJMSF019L10- TGCCTTGCTTCTCCCTTTGTGTCCTTCTTGCAGATTTTGCATGTCTTGTCAACCCATCCC
JMSF019L10+ TGCCTTGCTTCTCCCTTTGTGTCCTTCTTGCAGATTTTGCATGTCTTGTCAACCCATCCC
____________________________________________________________
consensus TGCCTTGCTTCTCCCTTTGTGTCCTTCTTGCAGATTTTGCATGTCTTGTCAACCCATCCC
. : . : . : . : . : . :
JMFN005I03- TCTTCCACATACTGCCCATCCACCTCAACATAAGACTTGAAGAAATCCTTGTATGTTCCT
JMFN036L21+ TCTTCCACATACTGCCCATCCACCTCAACATAAGACTTGAAGAAATCCTTGTATGTTCCT
rJMSF019L10- TCTTCCACATACTGCCCATCCACCTCAACATAAGACTTGAAGAAATCCTTGTATGTTCCT
JMSF019L10+ TCTTCCACATACTGCCCATCCACCTCAACATAAGACTTGAAGAAATCCTTGTATGTTCCT
____________________________________________________________
consensus TCTTCCACATACTGCCCATCCACCTCAACATAAGACTTGAAGAAATCCTTGTATGTTCCT
. : . : . : . : . : . :
JMFN005I03- CCAATCTTTCTTCTGAGAGCTCCATACTGTTCTCTGGACATTCTCCCTCCGGATTGAGTT
JMFN036L21+ CCAATCTTTCTTCTGAGAGCTCCATACTGTTCTCTGGAAATTCTCCCTCCGGATTGAGTT
rJMSF019L10- CCAATCTTTCTTCTGAGAGCTCCATACTGTTCTCTGGACATTCTCCCTCCGGATTGAGTT
JMSF019L10+ CCAATCTTTCTTCTGAGAGCTCCATACTGTTCTCTGGACATTCTCCCTCCGGATTGAGTT
____________________________________________________________
consensus CCAATCTTTCTTCTGAGAGCTCCATACTGTTCTCTGGACATTCTCCCTCCGGATTGAGTT
. : . : . : . : . : . :
JMFN005I03- GCTTCCCTAGCA
JMFN036L21+ GCTTCCCTAGCATCTTCAAGAAGCTCGGCATCTTTGGCGGATCTAACCTGGGAAAAATCG
rJMSF019L10- GCTTCCCTAGCATCTTCAAGAAGCTCGGCATCTTTGGCGGATCTAACCTGGGAAAAATCG
JMSF019L10+ GCTTCCCTAGCATCTTCAAGAAGCTCGGCATCTTTGGCGGATCTAACCTGGGAAAAATCG
____________________________________________________________
consensus GCTTCCCTAGCATCTTCAAGAAGCTCGGCATCTTTGGCGGATCTAACCTGGGAAAAATCG
. : . : . : . : . : . :
JMFN036L21+ AGAGCTTCCGTCACACTACTGAACAGAGATTGCTTCCTCTGCGCGGGTTCTTCATCGCTC
rJMSF019L10- AGAGCTTCCGTCACACTACTGAACAGAGATTGCTTCCTCTGCGCGGGTTCTTCATCGCTC
JMSF019L10+ AGAGCTTCCGTCACACTACTGAACAGAGATTGCTTCCTCTGCGCGGGTTCTTCATCGCTC
____________________________________________________________
consensus AGAGCTTCCGTCACACTACTGAACAGAGATTGCTTCCTCTGCGCGGGTTCTTCATCGCTC
. : . : . : . : . : . :
JMFN036L21+ TTCTCTTTCTTGGCTGAAACCACGAAAGATTTCTTGAGGCTTCTTCTGCTGGGAACGCCG
rJMSF019L10- TTCTCTTTCTTGGCTGAAACCACGAAAGATTTCTTGAGGCTTCTTCTGCTGGGAACGCCG
JMSF019L10+ TTCTCTTTCTTGGCTGAAACCACGAAAGATTTCTTGAGGCTTCTTCTGCTGGGAACGCCG
____________________________________________________________
consensus TTCTCTTTCTTGGCTGAAACCACGAAAGATTTCTTGAGGCTTCTTCTGCTGGGAACGCCG
. : . : . : . : . : . :
JMFN036L21+ CTACAAGTTGAGAGCTTGTGTGCACACCCAGTGTTTGTGAAAATGCCACTCTGTGGAGGC
rJMSF019L10- CTACAAGTTGAGAGCTTGTGTGCACACCCAGTGTTTGTGAAAATGCCACTCTGTGGAGGC
JMSF019L10+ CTACAAGTTGAGAGCTTGTGTGCACACCCAGTGTTTGTGAAAATGCCACTCTGTGGAGGC
____________________________________________________________
consensus CTACAAGTTGAGAGCTTGTGTGCACACCCAGTGTTTGTGAAAATGCCACTCTGTGGAGGC
. : . : . : . : . : . :
JMFN036L21+ GTCAAGGTCAGAGCCCTGAGACCCATTTT
rJMSF019L10- GTCAAGGTCAGAGCCCTGAGACCCATTTTTGCTCTGTATAGTTTTCAAGGTTAGTCTTTG
JMSF019L10+ GTCAAGGTCAGAGCCCTGAGACCCATTTTTGCTCTGTATAGTTTTCAAGGTTAGTCTTTG
____________________________________________________________
consensus GTCAAGGTCAGAGCCCTGAGACCCATTTTTGCTCTGTATAGTTTTCAAGGTTAGTCTTTG
. : . : . : . : . : . :
rJMSF019L10- GTGCCATTTTTGCTGCTTATATATATTGGTGTGAGGAGACGTTCATGA
JMSF019L10+ GTGCCATTTTTGCTGCTTATATATATTGGTGTGAGGAGACGTTCATGAGGGAGAGTTTTC
____________________________________________________________
consensus GTGCCATTTTTGCTGCTTATATATATTGGTGTGAGGAGACGTTCATGAGGGAGAGTTTTC