Previous Contig 005714:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035L24Sequence590005714 (3)gb:BT015363_16421913e-23Arabidopsis thaliana At1g33360 gene, complete cds.>gb:BT015893_1642511 Arabidops693008404 (4)gb:AP004865_18462236e-45Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P002
JMSF017N01Sequence237005714 (3)779008404 (4)gb:AP004865_18462233e-64Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P002
JMSF037O13Sequence465005714 (3)gb:AP004865_18462238e-07Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P002653008404 (4)gb:AP004865_18462231e-43Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P002

Alignment

This contig is upended


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JMFF035L24+ TTCTCAGGAGGCTCACTGCCGTATATCTGCAGA
                      ____________________________________________________________
consensus TTCTCAGGAGGCTCACTGCCGTATATCTGCAGA
 
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JMFF035L24+ GTCTCCCAGAAAGAGGACTTCAGGCGCTTCCCATACTCCTCCTCTTCCGACATCTTCTTA
                      ____________________________________________________________
consensus GTCTCCCAGAAAGAGGACTTCAGGCGCTTCCCATACTCCTCCTCTTCCGACATCTTCTTA
 
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JMFF035L24+ TCGGAATTCTTTCCCGTGACATTAGTTTTTACCCTCCCAATCTCGAAGAAACTTCCCTGG
                      ____________________________________________________________
consensus TCGGAATTCTTTCCCGTGACATTAGTTTTTACCCTCCCAATCTCGAAGAAACTTCCCTGG
 
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JMFF035L24+ AGAGGCGCCATCTTGTACGGCCGGAAATAGTAGCCGGTCTTACAATTGGGGCAGATATTC
                      ____________________________________________________________
consensus AGAGGCGCCATCTTGTACGGCCGGAAATAGTAGCCGGTCTTACAATTGGGGCAGATATTC
 
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JMFF035L24+ ACGGCGTGATAAGGGCCGCCGGGTTTCGAATTAGCATTAGTACTACTAGCGTTACTGTTA
                      ____________________________________________________________
consensus ACGGCGTGATAAGGGCCGCCGGGTTTCGAATTAGCATTAGTACTACTAGCGTTACTGTTA
 
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JMFF035L24+ CCGTTAGTTCCATCATTGTCGACGGCGACGGAGCTAGCTAAAACGCTAGCGTTTTTTCCG
JMSF037O13+ TTTCCG
                      ____________________________________________________________
consensus CCGTTAGTTCCATCATTGTCGACGGCGACGGAGCTAGCTAAAACGCTAGCGTTTTTTCCG
 
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JMFF035L24+ TTATTACTATCACAAGCGGAATTCGAATCGGAAGGAGGCGCCGGAATAAGGTGGGGGTGG
JMSF037O13+ TTNTTANTATCACAAGCGGAATTNGAATCGGAAGGAGGCGCCGGAATAAGGTGGGGGTGG
                      ____________________________________________________________
consensus TTATTACTATCACAAGCGGAATTCGAATCGGAAGGAGGCGCCGGAATAAGGTGGGGGTGG
 
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JMFF035L24+ CGGTTGGTGAAGAGGAGATCCATGTGCTTGGAGCAACGCGGACAGTTCACCTCCGCCCTA
JMSF037O13+ CGGTTGGTGAAGAGGAGATCCATGTGNTGGGAGCAACGCGGACAGTTCACCTCCGCCCTA
                      ____________________________________________________________
consensus CGGTTGGTGAAGAGGAGATCCATGTGCTTGGAGCAACGCGGACAGTTCACCTCCGCCCTA
 
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JMFF035L24+ ATCCTCCTAGTCTCATCGGAGGAACCGCCTCGGTCCCACTTGTACCTCGCCTGAACTCCG
JMSF037O13+ ATCCTCCTAGTCTCATCGGAGGAACCGCCTCGGTCCCACTTGTACCTCGCCTGAACTCCG
                      ____________________________________________________________
consensus ATCCTCCTAGTCTCATCGGAGGAACCGCCTCGGTCCCACTTGTACCTCGCCTGAACTCCG
 
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JMFF035L24+ ATTACCGACTCTCTCCGCCGAAAGTGCAGGCAGTTCACAAACCCCCGCGTCCGCCTCCGC
JMSF037O13+ ATTACCGACTCTCTCCGCCGAAAGTGCAGGCAGTTCACAAACCCCCGCGTCCGCCTCCGC
                      ____________________________________________________________
consensus ATTACCGACTCTCTCCGCCGAAAGTGCAGGCAGTTCACAAACCCCCGCGTCCGCCTCCGC
 
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JMFF035L24+ CAATCCTCATTCCAAGT
JMSF037O13+ CAATCCTCATTCCAAGTCGACGCTGCTCCCGCCGCCGGCGCCGCCGTCCTCCGCCTTCTA
JMSF017N01+ TCATTCCAAGTCGACGCTGCTCCCGCCGCCGGCGCCGCCGTCCTCCGCCTTCTA
                      ____________________________________________________________
consensus CAATCCTCATTCCAAGTCGACGCTGCTCCCGCCGCCGGCGCCGCCGTCCTCCGCCTTCTA
 
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JMSF037O13+ CAGGCAGTTATAACCGCCGCCTCTTTCAGCTTCCTCCATCTCCATATCCCGGACATCTCT
JMSF017N01+ CAGGCAGTTATAACCGCCGCCTCTTTCAGCTTCCTCCATCTCCATATCCCGGACATCTCT
                      ____________________________________________________________
consensus CAGGCAGTTATAACCGCCGCCTCTTTCAGCTTCCTCCATCTCCATATCCCGGACATCTCT
 
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JMSF037O13+ ACTCCCGATTCAAAAACCACCGCCTGGAAAGCATTCACTTCCTATAGACCTGAAATACGT
JMSF017N01+ ACTCCCGATTCAAAAACCACCGCCTGGAAAGCATTCACTTCCTATAGACCTGAAATACGT
                      ____________________________________________________________
consensus ACTCCCGATTCAAAAACCACCGCCTGGAAAGCATTCACTTCCTATAGACCTGAAATACGT
 
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JMSF037O13+ GAAATTGGATCTACGTCGAGGAATCAACCGTTCTGAGC
JMSF017N01+ GAAATTGGATCTACGTCGAGGAATCAACCGTTCTGAGCACCGGAAATCTGGCCAAAACCC
                      ____________________________________________________________
consensus GAAATTGGATCTACGTCGAGGAATCAACCGTTCTGAGCACCGGAAATCTGGCCAAAACCC