Previous Contig 005687:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS015G05Sequence491005687 (3)gb:AB012239_15116634e-28Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
JMSF017H13Sequence586005687 (3)gb:AB012239_15116639e-17Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.741011961 (2)gb:AB023044_15155022e-62Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD22.
JMSF034N11Sequence653005687 (3)gb:AB012239_15116631e-27Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.724011961 (2)gb:AB023044_15155021e-59Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD22.

Alignment

This contig is upended


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JMFS015G05+ CTATTGCATTTACGATGTTGTCTGATTCGAT
                      ____________________________________________________________
consensus CTATTGCATTTACGATGTTGTCTGATTCGAT
 
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JMFS015G05+ CTGTTGAACTTCAACCTCAACCTTTCTCTTAGTACACAATGCCTTGTATGGAAGAAGCTT
JMSF034N11+ AACTTCAACCTCAACCTTTCTCCTAGTACACAATGCCTTGTATGGAAGAAGCTT
                      ____________________________________________________________
consensus CTGTTGAACTTCAACCTCAACCTTTCTCTTAGTACACAATGCCTTGTATGGAAGAAGCTT
 
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JMFS015G05+ TTGAGAAGTTTGCCATTCGATTTCTTTTATGAAAGCAGCTGCAACATCATCGCGTACTTG
JMSF034N11+ TTGAGAAGTTTGCCATTCGATTTCTTTTATGAAAGCAGCTGCAACATCATCGCGTACTTG
JMSF017H13+ ATTCGATTTCTTTTATGAAAGCAGCTGCAACATCATCGCGTACTTG
                      ____________________________________________________________
consensus TTGAGAAGTTTGCCATTCGATTTCTTTTATGAAAGCAGCTGCAACATCATCGCGTACTTG
 
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JMFS015G05+ TGAAATAGGAATCGAATT-CCCCATGGGAGTTGGAACTGCAGAAATCACAGGTCGAACGT
JMSF034N11+ TGAAATAGGAATCGAATT-CCCCATGGGAGTTGGAACTGCAGAAATCACAGGTCGAACGT
JMSF017H13+ TGAAATAGGAATCGAATTCCCCCATGGGAGTTGGAACTGCAGAAATCACAGGTCGAACGT
                      ____________________________________________________________
consensus TGAAATAGGAATCGAATT-CCCCATGGGAGTTGGAACTGCAGAAATCACAGGTCGAACGT
 
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JMFS015G05+ GTAAGAGCTTGAAGAGAATCTTCCCTTCTGGAACAAATTTGTCCAGTGCCCAGTTCACTG
JMSF034N11+ GTAAGAGCTTGAAGAGAATCTTCCCTTCTGGAACAAATTTGTCCAGTGCCCAGTTCACTG
JMSF017H13+ GTAAGAGCTTGAAGAGAATCTTCCCTTCTGGAACAAATTTGTCCAGTGCCCAGTTCACTG
                      ____________________________________________________________
consensus GTAAGAGCTTGAAGAGAATCTTCCCTTCTGGAACAAATTTGTCCAGTGCCCAGTTCACTG
 
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JMFS015G05+ CATATTTGCTTTTCGATTTCCCATTGATAGCTACTGCAACAACCAAAGAGGGCGAAGGGG
JMSF034N11+ CATATTTGCTTTTCGATTTCCCATTGATAGCTACTGCAACAACCAAAGAGGGCGAAGGGG
JMSF017H13+ CATATTTGCTTTTCGATTTCCCATTGATAGCTACTGCAACAACCAAAGAGGGCGAAGGGG
                      ____________________________________________________________
consensus CATATTTGCTTTTCGATTTCCCATTGATAGCTACTGCAACAACCAAAGAGGGCGAAGGGG
 
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JMFS015G05+ GCATCGCGTTTAGACCATCCATCTCAGACTGCAAAAACTTCTTCTCTGCAAAACTTTATC
JMSF034N11+ GCATCGCGTTTAGACCATCCATCTCAGACTGCAAAAACTTCTTCTCTGCAAAACTTTATC
JMSF017H13+ GCATCGCGTTTAGACCATCCATCTCAGACTGCAAAAACTTCTTCTCTGCAAAACTTTATC
                      ____________________________________________________________
consensus GCATCGCGTTTAGACCATCCATCTCAGACTGCAAAAACTTCTTCTCTGCAAAACTTTATC
 
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JMFS015G05+ CTCAGGTTTTTATGGATGAAAAATGTCAAGAACCAAGGAATTGCCTGGGTTCTACCAGAG
JMSF034N11+ CTCAGGTTTTTATGGATGAAAAATGTCAAGAACCAAGGAATTGCCTGGGTTCTACCAGAG
JMSF017H13+ CTCAGGTTTTTATGGATGAAAAATGTCAAGAACCAAGGAATTGCCTGGGTTCTACCAGAG
                      ____________________________________________________________
consensus CTCAGGTTTTTATGGATGAAAAATGTCAAGAACCAAGGAATTGCCTGGGTTCTACCAGAG
 
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JMFS015G05+ GCATTCAAGCAAGAAATGAAGAACACAACATTTTCTCTCTC
JMSF034N11+ GCATTCAAGCAAGAAATGAAGAACACAACATTTTCTCTCTCTAAAAAACAATTCAATGGC
JMSF017H13+ GCATTCAAGCAAGAAATGAAGAACACAACATTTTCTCTCTCTAAAAAACAATTCAATGGC
                      ____________________________________________________________
consensus GCATTCAAGCAAGAAATGAAGAACACAACATTTTCTCTCTCTAAAAAACAATTCAATGGC
 
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JMSF034N11+ AAAAGAACATGAATTCACACAGTACTATGACTCTATGAGTATATTTAAGGTTGGGTAGCT
JMSF017H13+ AAAAGAACATGAATTCACACAGTACTATGACTCTATGAGTATATTTAAGGTTGGGTAGCT
                      ____________________________________________________________
consensus AAAAGAACATGAATTCACACAGTACTATGACTCTATGAGTATATTTAAGGTTGGGTAGCT
 
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JMSF034N11+ TCCCAGAAAAGGAGTAAATGTGAGACACACCCCCTATCTTAACTCCCCCAAAGGCTTCAC
JMSF017H13+ TCCCAGAAAAGGAGTAAATGTGAGACACACCCCCTATCTTAACTCCCCCAAAGGCTTCAC
                      ____________________________________________________________
consensus TCCCAGAAAAGGAGTAAATGTGAGACACACCCCCTATCTTAACTCCCCCAAAGGCTTCAC
 
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JMSF034N11+ TCTTTCAGCTCTCTGAATTCTGATTGGTCTGGAAGGCAAAAACCGTGGCGTAAGACGATC
JMSF017H13+ TCTTTCAGCTCTCTGAATTCTGATTGGTCTGGAAGGCAAAAACCGTGGCGTAAGACGATC
                      ____________________________________________________________
consensus TCTTTCAGCTCTCTGAATTCTGATTGGTCTGGAAGGCAAAAACCGTGGCGTAAGACGATC