Previous Contig 005682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040E02Sequence547005682 (6)gb:AY057565_15639822e-16Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A762013349 (5)gb:AY057565_15639829e-25Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A
JMFF042M01Sequence658005682 (6)gb:AY057565_15639824e-31Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A615013349 (5)
JMFS103F06Sequence562005682 (6)gb:AY057565_15639821e-34Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A
JMSF017F22Sequence227005682 (6)718013349 (5)gb:AY057565_15639823e-20Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A
JMSF028J10Sequence670005682 (6)gb:AY057565_15639825e-37Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A722013349 (5)gb:AY057565_15639823e-12Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A
JMSF041I03Sequence794005682 (6)gb:AY057565_15639821e-53Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds.>gb:AY057701_1564113 A767013349 (5)gb:AP004801_18453213e-07Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P061

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF041I03+ CTTTAATTGCATAAGCA
                      ____________________________________________________________
consensus CTTTAATTGCATAAGCA
 
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JMSF041I03+ GCTTTAAAGCCATTTTCTGTAACTAGCTCAGCAACCAGTTCCGAGCTACCATCAAATTTG
                      ____________________________________________________________
consensus GCTTTAAAGCCATTTTCTGTAACTAGCTCAGCAACCAGTTCCGAGCTACCATCAAATTTG
 
. : . : . : . : . : . :
JMSF028J10+ TCCTTGAACTTCAAAGACAGCTTCTTCAAG
JMFF042M01+ AG
JMFS103F06+ TCCTTGAACTTCAAAGACAGCTTCTTCAAG
JMSF041I03+ TCTAGAATGAATAATGTGGTGTTCTCTGGCTCCTTGAACTTCAAAGACAGCTTCTTCAAG
                      ____________________________________________________________
consensus TCTAGAATGAATAATGTGGTGTTCTCTGGCTCCTTGAACTTCAAAGACAGCTTCTTCAAG
 
. : . : . : . : . : . :
JMSF028J10+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMFF042M01+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMFS103F06+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
JMSF041I03+ AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
                      ____________________________________________________________
consensus AACCCGGGCTTGTCCTCGCCATTGTAGCTCACAGTAACTGGCTTCTTCTTCAAGCCCCGG
 
. : . : . : . : . : . :
JMSF028J10+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFF042M01+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFS103F06+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMSF041I03+ ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
JMFF040E02+ AACTGTGCA
                      ____________________________________________________________
consensus ATATCCGGGCTCCCCACCTCCTTCAGCTCGCGAGCCGGCCTTATATCCAACAACTGTGCA
 
. : . : . : . : . : . :
JMSF028J10+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFF042M01+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFS103F06+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMSF041I03+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
JMFF040E02+ TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
                      ____________________________________________________________
consensus TTGGCATCATCAGCCAGTTTGGCATAAGCAGTCTTTGCAGACTCAACACCCCATGGCTTA
 
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JMSF028J10+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFF042M01+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFS103F06+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMSF041I03+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
JMFF040E02+ GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
                      ____________________________________________________________
consensus GGCTTGCTCAACAACTGAGACACAAGAAGGGGCACTGCCAAAATTGCCACACCGCCAGCT
 
. : . : . : . : . : . :
JMSF028J10+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATGACCCCGCTTGGATCG
JMFF042M01+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMFS103F06+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMSF041I03+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
JMFF040E02+ ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
                      ____________________________________________________________
consensus ACAATTACAGGGTTGTCACCAGCAAAAGTGGTCACAGTTTCCATAACCCCGCTTGGATCG
 
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JMSF028J10+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFF042M01+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFS103F06+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMSF041I03+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
JMFF040E02+ AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
                      ____________________________________________________________
consensus AAGTCAGTGCTGACACTGGTCTGCTGGAGGGCTTCCTCATATGTTAGCGCTTTAGCTAAG
 
. : . : . : . : . : . :
JMSF028J10+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFF042M01+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFS103F06+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMSF041I03+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
JMFF040E02+ CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
                      ____________________________________________________________
consensus CCCGAGCTCATAACAGAAGATAGAAGCACTAGCCCCCCTTTAACATTTCTTGATATAGCC
 
. : . : . : . : . : . :
JMSF028J10+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFF042M01+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFS103F06+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMSF041I03+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMFF040E02+ TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
JMSF017F22+ GAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
                      ____________________________________________________________
consensus TCCATGGAGTTTGAAGAAGAGAGGCTCTTGAATGGTAAAGAAGAAGGTAGCAATGGGATT
 
. : . : . : . : . : . :
JMSF028J10+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFF042M01+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFS103F06+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCA
JMSF041I03+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMFF040E02+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
JMSF017F22+ TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
                      ____________________________________________________________
consensus TTTCTGGGTTCATTTCTTCTCTCAGAAAGAACAGAAAGTGGAGTCAATCTCAGTGCATTG
 
. : . : . : . : . : . :
JMSF028J10+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMFF042M01+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMSF041I03+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMFF040E02+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
JMSF017F22+ ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGCTCTCTATATATTCTGA
                      ____________________________________________________________
consensus ACAGCCTCCATAGCATAAATCTTGATCCCCTTATGAACTAGAGTTCTCTATATATTCTGA
 
. : . : . : . : . : . :
JMSF028J10+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCA
JMFF042M01+ GAGGATTGATGGAAGCTTAANTTGTAGCTATACCATAACTTTGATTCTTGTGATCT
JMSF041I03+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGCGATCT
JMFF040E02+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCT
JMSF017F22+ GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCTGGCC
                      ____________________________________________________________
consensus GAGGATTGATGGAAGCTTAA-TTGTAGCTATACCATAACTTTGATTCTTGTGATCTGGCC