Previous Contig 005678:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017F10Sequence245005678 (2)pir|T02324|T023249e-05hypothetical protein At2g34360 [imported] - Arabidopsis thaliana>gb:AC004481_153778012526 (2)gb:AP006048_18604605e-76Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B142
JMSF027D05Sequence601005678 (2)pir|T02324|T023246e-51hypothetical protein At2g34360 [imported] - Arabidopsis thaliana>gb:AC004481_153730012526 (2)gb:AP006048_18604606e-62Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B142

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF027D05+ CGGTGACCACCAAAGGGAAG
                      ____________________________________________________________
consensus CGGTGACCACCAAAGGGAAG
 
. : . : . : . : . : . :
JMSF027D05+ ACATTGTTTTGGGCTTGCAGAAACCGAATGTAACACTGAAGAAGAGCATAGGGAAACAGG
                      ____________________________________________________________
consensus ACATTGTTTTGGGCTTGCAGAAACCGAATGTAACACTGAAGAAGAGCATAGGGAAACAGG
 
. : . : . : . : . : . :
JMSF027D05+ CCTGGGATCAGAAACGAGGCGTAGTTTCCTGCTTCGGCTGATATCTCAGGATCCTGTCCC
                      ____________________________________________________________
consensus CCTGGGATCAGAAACGAGGCGTAGTTTCCTGCTTCGGCTGATATCTCAGGATCCTGTCCC
 
. : . : . : . : . : . :
JMSF027D05+ ATAAACACGAGAATAGACCCTGTGTTGGCCCAAATACAAGCCAGTGGAACACTGATTAGC
                      ____________________________________________________________
consensus ATAAACACGAGAATAGACCCTGTGTTGGCCCAAATACAAGCCAGTGGAACACTGATTAGC
 
. : . : . : . : . : . :
JMSF027D05+ AGCAGAATAAGCATTGCCCTCTGCGTATGAACTCCTAGCAATCGGTAGTGTTTAGCGCCA
                      ____________________________________________________________
consensus AGCAGAATAAGCATTGCCCTCTGCGTATGAACTCCTAGCAATCGGTAGTGTTTAGCGCCA
 
. : . : . : . : . : . :
JMSF027D05+ TATGCCTGACCACAGAATGTCTCCAATGCACAGGACATTCCATTCAGCAAGGTGTAACCA
                      ____________________________________________________________
consensus TATGCCTGACCACAGAATGTCTCCAATGCACAGGACATTCCATTCAGCAAGGTGTAACCA
 
. : . : . : . : . : . :
JMSF027D05+ GTGACAGTGGCGAAAGAAGTGGCTATGGAGGCACCAGAAAGGGAGAGCTCTCCCAGGTGA
JMSF017F10+ GGTGA
                      ____________________________________________________________
consensus GTGACAGTGGCGAAAGAAGTGGCTATGGAGGCACCAGAAAGGGAGAGCTCTCCCAGGTGA
 
. : . : . : . : . : . :
JMSF027D05+ CCAACAAACATGATGGAGATGACATTGAAGCAATTCAGCAAAAGGTTGACCGACATTAAT
JMSF017F10+ CCAACAAACATGATGGAGATGACATTGAAGCAATTCAGCAAAAGGTTGACCGACATTAAT
                      ____________________________________________________________
consensus CCAACAAACATGATGGAGATGACATTGAAGCAATTCAGCAAAAGGTTGACCGACATTAAT
 
. : . : . : . : . : . :
JMSF027D05+ GGAGCTCCCAGCCCCATCAGCTTCTTGGCTTCCGCCTTCGTCTCGTCCCATTTCTTCCGC
JMSF017F10+ GGAGCTCCCAGCCCCATCAGCTTCTTGGCTTCCGCCTTCGTCTCGTCCCATTTCTTCCGC
                      ____________________________________________________________
consensus GGAGCTCCCAGCCCCATCAGCTTCTTGGCTTCCGCCTTCGTCTCGTCCCATTTCTTCCGC
 
. : . : . : . : . : . :
JMSF027D05+ CTTTCTTTCCCATATTTTGAGATCAATGGAAACTCAACATCTTCTTCTCTCTCCCTGCCG
JMSF017F10+ CTTTGTTTCCCATATTTTGAGATCAATGGAAACTCAACATCTTCTTCTCTCTCCCTGCCG
                      ____________________________________________________________
consensus CTTTGTTTCCCATATTTTGAGATCAATGGAAACTCAACATCTTCTTCTCTCTCCCTGCCG
 
. : . : . : . : . : . :
JMSF027D05+ CAGCTTTCCATTTTCTTTTTCTTTTCCTTTCTCTCTCCC
JMSF017F10+ CAGCTTTCCATTTTCTTTTTCTTTTCCTTTCTCTCTCCCTCCAATTCACTCTCAGTCTTC
                      ____________________________________________________________
consensus CAGCTTTCCATTTTCTTTTTCTTTTCCTTTCTCTCTCCCTCCAATTCACTCTCAGTCTTC