Previous Contig 005476:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS134F08Sequence641005476 (5)pir|E86245|E862452e-67hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_890124 Arabid
JMFS158D08Sequence435005476 (5)pir|E86245|E862453e-38hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_890124 Arabid
JMSF014H03Sequence247005476 (5)pir|E86245|E862450.032hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_890124 Arabid788011787 (4)gb:BT003692_16368912e-32Arabidopsis thaliana At1g61220 mRNA, complete cds.>gb:AK118677_1816641 Arabidops
JMSF022J22Sequence655005476 (5)pir|E86245|E862456e-66hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_890124 Arabid798011787 (4)gb:BT003692_16368918e-35Arabidopsis thaliana At1g61220 mRNA, complete cds.>gb:AK118677_1816641 Arabidops
JMSF051N15Sequence671005476 (5)pir|E86245|E862454e-70hypothetical protein [imported] - Arabidopsis thaliana>gb:AE005172_890124 Arabid768011787 (4)gb:BT003692_16368913e-27Arabidopsis thaliana At1g61220 mRNA, complete cds.>gb:AK118677_1816641 Arabidops

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051N15+ AGACTACCCAC
                      ____________________________________________________________
consensus AGACTACCCAC
 
. : . : . : . : . : . :
JMFS134F08+ CGACCATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTTGTATGTGTGT
JMSF051N15+ CGACCATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTTGTATGTGTGT
JMSF022J22+ ATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTNGTATGTGTGT
                      ____________________________________________________________
consensus CGACCATCAGGAGTGAATCTTATGGTGCTAATTCCTCGCGTGTGCCCTTTGTATGTGTGT
 
. : . : . : . : . : . :
JMFS134F08+ ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
JMSF051N15+ ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
JMSF022J22+ ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
                      ____________________________________________________________
consensus ATGCATCCTTTCTTTCTTATATCCCATATCTTTAGATTAGTGTCCATAGAACCAGAAGCA
 
. : . : . : . : . : . :
JMFS158D08+ TGTGTCCACTAAGC
JMFS134F08+ AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
JMSF051N15+ AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
JMSF022J22+ AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
                      ____________________________________________________________
consensus AAAAATTCACCAAATGGATGAAATTCAAGAGCAGTGCAATAGGATCTGTGTCCACTAAGC
 
. : . : . : . : . : . :
JMFS158D08+ GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
JMFS134F08+ GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
JMSF051N15+ GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
JMSF022J22+ GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
                      ____________________________________________________________
consensus GTGCGAATCATTTTTGTATCTTCTAGATCCCACAGCTTTATTAATCCGGATGAAGATCCA
 
. : . : . : . : . : . :
JMFS158D08+ GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
JMFS134F08+ GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
JMSF051N15+ GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
JMSF022J22+ GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
                      ____________________________________________________________
consensus GCAGCCACTAAAATCTCAGCTGAATCAAAAGCTATAGACTCTACTGGACTTGTGTGGCCA
 
. : . : . : . : . : . :
JMFS158D08+ GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
JMFS134F08+ GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
JMSF051N15+ GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
JMSF022J22+ GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
                      ____________________________________________________________
consensus GATAGGGTAGATGTGGAGGTTGGTTTGCCAATGGACCAAAGATTCACACTGTGATCATCA
 
. : . : . : . : . : . :
JMFS158D08+ CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
JMFS134F08+ CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
JMSF051N15+ CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
JMSF022J22+ CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
JMSF014H03+ ATTCCCG
                      ____________________________________________________________
consensus CCCCCAGTGAGGAACATCCGACATGTCTTCTTCCCAAACCTTAAACAGTTCACATTCCCG
 
. : . : . : . : . : . :
JMFS158D08+ GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMFS134F08+ GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMSF051N15+ GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMSF022J22+ GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
JMSF014H03+ GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
                      ____________________________________________________________
consensus GAATGCGCCACAAACTCCTGCAATTTATATCCACGCTTCGCCATCCGAAAGAAACGACTG
 
. : . : . : . : . : . :
JMFS158D08+ AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMFS134F08+ AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMSF051N15+ AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMSF022J22+ AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
JMSF014H03+ AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
                      ____________________________________________________________
consensus AATTGACCGGAAAATCAAGACTTGGAGGACGGAGTGGGGCGTTCCGCAGCCGCGGAGCAG
 
. : . : . : . : . : . :
JMFS158D08+ AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMFS134F08+ AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMSF051N15+ AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMSF022J22+ AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
JMSF014H03+ AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
                      ____________________________________________________________
consensus AAATCCAGCGAGAAAAAAAGCTGGGAACCGATTAGCTCAGAGTAGAGAGATTAAAGAAGT
 
. : . : . : . : . : . :
JMFS158D08+ T
JMFS134F08+ TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTG
JMSF051N15+ TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC
JMSF022J22+ TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC
JMSF014H03+ TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC
                      ____________________________________________________________
consensus TGGAAGAAATGGAAAATTTCACAAGACCACACCTGAGTCTGAGGGGGGCCTCCAAAAAGC