Previous Contig 005461:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004F23Sequence217005461 (5)745002489 (11)gb:AF466824_18023703e-87Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds.
JMFF017A16Sequence406005461 (5)gb:AB009053_15107008e-20Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.>gb:AF466198_18021670002489 (11)gb:AB009053_15107003e-71Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.>gb:AF466198_18021
JMSF004G23Sequence162005461 (5)388002489 (11)gb:AJ843123_18145084e-27Plantago major partial mRNA for putative xanthine/uracil permease (xup1 gene).
JMSF014E10Sequence210005461 (5)803002489 (11)gb:AB009053_15107005e-82Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.>gb:AF466198_18021
JMSF050G11Sequence171005461 (5)766002489 (11)gb:AF466824_18023707e-75Arabidopsis thaliana clone GBGe55 putative permease 1 mRNA, partial cds.

Alignment

This contig is upended


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JMFF017A16+ CANCGAATAGCAGAGTGTGAATAACTTTGGCTTTCTCNTCANTTCCGCCT
                      ____________________________________________________________
consensus CANCGAATAGCAGAGTGTGAATAACTTTGGCTTTCTCNTCANTTCCGCCT
 
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JMFF017A16+ CCCATNTGGGGANCGAGANCGGNGGGAATCATANCCGTTGTCCCAAGCATCACAAGATAG
                      ____________________________________________________________
consensus CCCATNTGGGGANCGAGANCGGNGGGAATCATANCCGTTGTCCCAAGCATCACAAGATAG
 
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JMFF017A16+ TGTNGAAATCCAAGAAGAATGGCCTCGGGCCNCGGNGGAGGNCTAGTAATGCAGTAAGAA
                      ____________________________________________________________
consensus TGTNGAAATCCAAGAAGAATGGCCTCGGGCCNCGGNGGAGGNCTAGTAATGCAGTAAGAA
 
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JMFF017A16+ ACACTGGGAAGNTGATCCNTGGGNGGATGAGGCGTNTCATNTGCTTTTGGTGCGGGAGNT
                      ____________________________________________________________
consensus ACACTGGGAAGNTGATCCNTGGGNGGATGAGGCGTNTCATNTGCTTTTGGTGCGGGAGNT
 
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JMFF004F23+ GCCATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTACTTT
JMFF017A16+ GCTCCACCTCCNGCCANGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTACTTT
JMSF004G23+ TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTACTTT
JMSF050G11+ GCCANGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTACTTT
                      ____________________________________________________________
consensus GCTCCACCTCCNGCCATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTACTTT
 
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JMFF004F23+ CACTCAATAAAAGTAACACCCAGAGTGGAGCTATTTACAGCTGAAGTGTCTATAGAACAG
JMFF017A16+ CACTCAATAAAAGTAACACCCAGAGTGGAGCTATTTACAGCTGAAGTGTCTATAGAACAG
JMSF004G23+ CACTCAATAAAAGTAACACCCAGAGTGGAGCTATTTACAGCTGAAGTGTCTATAGAACAG
JMSF050G11+ CACTCAATAAAAGTAACACCCAGAGTGGAGCTATTTACAGCTGAAGTGTCTATAGAACAG
JMSF014E10+ CTATTTACAGCTGAAGTGTCTATAGAACAG
                      ____________________________________________________________
consensus CACTCAATAAAAGTAACACCCAGAGTGGAGCTATTTACAGCTGAAGTGTCTATAGAACAG
 
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JMFF004F23+ CCCAGATTAGAAGCGGTGCAAGAACCCAAATC
JMFF017A16+ CCCAGATTAGAAGCGGTGCAAGAACCCAAATCC
JMSF004G23+ CCCAGATTAGAAGCGGTGCAAGAACCCAAATCC
JMSF050G11+ CCCAGATTAGAAGCGGTGCAAGAACCCAAATCC
JMSF014E10+ CCCAGATTAGAAGCGGTGCAAGAACCCAAATCCAGAAAGCAAAAGATTCAAGAAAAGGCA
                      ____________________________________________________________
consensus CCCAGATTAGAAGCGGTGCAAGAACCCAAATCCAGAAAGCAAAAGATTCAAGAAAAGGCA
 
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JMSF014E10+ CAATTTTTAGAGAACCCAGAAAGCTCAATCAGTCAGGAGTGAAGAATGACAGGATTGAAA
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consensus CAATTTTTAGAGAACCCAGAAAGCTCAATCAGTCAGGAGTGAAGAATGACAGGATTGAAA
 
. : . : . : . : . : . :
JMSF014E10+ CACCTCACATGCTTCTAGTATACCCTTCACCCCCCACCCCCCAACACTCTACACAATAGC
                      ____________________________________________________________
consensus CACCTCACATGCTTCTAGTATACCCTTCACCCCCCACCCCCCAACACTCTACACAATAGC