Previous Contig 005391:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013E18Sequence441005391 (2)743013560 (2)gb:AC115599_12058240.021Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete s
JMSF044L10Sequence809005391 (2)gb:AY140009_15824500.006Arabidopsis thaliana expressed protein (At3g26000) mRNA, complete cds.746013560 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044L10+ TCGCGCAAAAGATTTGCAAACTTGCTCAA
                      ____________________________________________________________
consensus TCGCGCAAAAGATTTGCAAACTTGCTCAA
 
. : . : . : . : . : . :
JMSF044L10+ CAAAGAGAAGGTCCTCAACACCTAAACGATAAAGGGCCAGAGGCAGAGCATCTGGAGGAG
                      ____________________________________________________________
consensus CAAAGAGAAGGTCCTCAACACCTAAACGATAAAGGGCCAGAGGCAGAGCATCTGGAGGAG
 
. : . : . : . : . : . :
JMSF044L10+ AACCTCCTTCACCCTGGAAACCCTCTCCAGGTAATCCTTCACGCTTGTTGATTTCATCAT
                      ____________________________________________________________
consensus AACCTCCTTCACCCTGGAAACCCTCTCCAGGTAATCCTTCACGCTTGTTGATTTCATCAT
 
. : . : . : . : . : . :
JMSF044L10+ AAAAAATCCAATATTTTTCATAACTGAAATCCATAGTCTCATCCATCTCACAATCCGAAA
                      ____________________________________________________________
consensus AAAAAATCCAATATTTTTCATAACTGAAATCCATAGTCTCATCCATCTCACAATCCGAAA
 
. : . : . : . : . : . :
JMSF044L10+ AGACATGGCCATCAAATTCACCATTCCCAAAATCCATGGCTCCAACTCCAGAGTTCTCAT
                      ____________________________________________________________
consensus AGACATGGCCATCAAATTCACCATTCCCAAAATCCATGGCTCCAACTCCAGAGTTCTCAT
 
. : . : . : . : . : . :
JMSF044L10+ TCATCTTCTCGGCACCTGACTCTGGATGAATCCTCTTGCTACCATTCAATACAAAATCAA
                      ____________________________________________________________
consensus TCATCTTCTCGGCACCTGACTCTGGATGAATCCTCTTGCTACCATTCAATACAAAATCAA
 
. : . : . : . : . : . :
JMSF044L10+ ATCCCGCAAATAACTGATCATCAACTTTCCCAACCCCAATTTTCAATCACGAACCCAATT
JMSF013E18+ TCAATCACGAACCCAATT
                      ____________________________________________________________
consensus ATCCCGCAAATAACTGATCATCAACTTTCCCAACCCCAATTTTCAATCACGAACCCAATT
 
. : . : . : . : . : . :
JMSF044L10+ TCTATGGTATCAATATTCATATCAAATGGATCCTGAGGCAGCAAATCCGCAACATCATCT
JMSF013E18+ TCTATGGTATCAATATTCATATCAAATGGATCCTGAGGCAGCAAATCCGCAACATCATCT
                      ____________________________________________________________
consensus TCTATGGTATCAATATTCATATCAAATGGATCCTGAGGCAGCAAATCCGCAACATCATCT
 
. : . : . : . : . : . :
JMSF044L10+ GAAGCATTACGGATCTCCTCCTTTCTATTGCCCTGAAAATTCCCCTTCCCGCAATCCAAA
JMSF013E18+ GAAGCATTACGGATCTCCTCCTTTCTATTGCCCTGAAAATTCCCCTTCCCGCAATCCAAA
                      ____________________________________________________________
consensus GAAGCATTACGGATCTCCTCCTTTCTATTGCCCTGAAAATTCCCCTTCCCGCAATCCAAA
 
. : . : . : . : . : . :
JMSF044L10+ CCCCAGGATTTACCAAAACAATCCCGATTCTTATCCGGGCGATCTTCCGAGAAACGCCTA
JMSF013E18+ CCCCAGGATTTACCAAAACAATCCCGATTCTTATCCGGGCGATCTTCCGAGAAACGCCTA
                      ____________________________________________________________
consensus CCCCAGGATTTACCAAAACAATCCCGATTCTTATCCGGGCGATCTTCCGAGAAACGCCTA
 
. : . : . : . : . : . :
JMSF044L10+ TTCTGAAAGTTGATCCCACTGCAAAAGCTTCCTCCTTGATTCAAAGCCATCCGGGAACGC
JMSF013E18+ TTCTGAAAGTTGATCCCACTGCAAAAGCTTCCTCCTTGATTCAAAGCCATCCGGGAACGC
                      ____________________________________________________________
consensus TTCTGAAAGTTGATCCCACTGCAAAAGCTTCCTCCTTGATTCAAAGCCATCCGGGAACGC
 
. : . : . : . : . : . :
JMSF044L10+ CCCCTCTTTCCACTCAAAACCTAGCCACAATCAAACAAAAACACCGCATGCCTCGCGATT
JMSF013E18+ CCCCTCTTTCCACTCAAAACCTAGCCACAATCAAACAAAAACACCGCATGCCTCGCGATT
                      ____________________________________________________________
consensus CCCCTCTTTCCACTCAAAACCTAGCCACAATCAAACAAAAACACCGCATGCCTCGCGATT
 
. : . : . : . : . : . :
JMSF044L10+ TTTAGTTAGAAATCCCAAAATGCACAAATATGTACATAACGGCACAACCCTAATTCTCCA
JMSF013E18+ TTTAGTTAGAAATCCCAAAATGCACAAATATGTACATAACGGCACAACCCTAATTCTCCA
                      ____________________________________________________________
consensus TTTAGTTAGAAATCCCAAAATGCACAAATATGTACATAACGGCACAACCCTAATTCTCCA
 
. : . : . : . : . : . :
JMSF044L10+ TAGAATCCGCTGCAAAATATGAGGTTAGGGATGCCACACCAGAAATTTCAGAAATCAC
JMSF013E18+ TAGAATCCGCTGCAAAATATGAGGTTAGGGATGCCACACCAGAAATTTCAGAAATCACCC
                      ____________________________________________________________
consensus TAGAATCCGCTGCAAAATATGAGGTTAGGGATGCCACACCAGAAATTTCAGAAATCACCC