Previous Contig 005372:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F23Sequence341005372 (9)gb:AY227203_15910576e-28Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds757012597 (9)gb:AY227203_15910573e-84Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF013B20Sequence267005372 (9)792012597 (9)gb:AY227203_15910572e-84Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF018P02Sequence375005372 (9)gb:AY227203_15910572e-27Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds737012597 (9)gb:AY227203_15910573e-98Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF028A14Sequence681005372 (9)gb:AY227203_15910578e-90Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds789012597 (9)gb:AY227203_15910571e-91Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF028F10Sequence683005372 (9)gb:AY227203_15910578e-90Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds791012597 (9)gb:AY227203_15910578e-91Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF038P14Sequence678005372 (9)gb:AY227203_15910577e-86Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds851012597 (9)gb:AY227203_1591057e-114Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF042L13Sequence740005372 (9)gb:AY227203_15910571e-95Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds841012597 (9)gb:AY227203_1591057e-112Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF044N12Sequence800005372 (9)gb:AY227203_1591057e-106Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds772012597 (9)gb:AY227203_1591057e-107Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF051J20Sequence678005372 (9)gb:AF269064_17820566e-82Zea mays T-cytoplasm male sterility restorer factor 2 (rf2) mRNA, rf2-R213 allel800012597 (9)gb:AY227203_1591057e-110Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds

Alignment

This contig is upended


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JMSF044N12+               GGGAGGAAGACCAGCCTCATGGAATAGTTTCCCAGCATAAAGTGCGGTTAATGGTG
                      ____________________________________________________________
consensus                 GGGAGGAAGACCAGCCTCATGGAATAGTTTCCCAGCATAAAGTGCGGTTAATGGTG
 
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JMSF044N12+           TTTGCTCTGCAGTCTTTAGGACAACGGTATTCCCACAAGCTAACGCAGGCCCGACTTTCC
JMSF028F10+                                                AGCTAACGCAGGCCCGACTTTCC
JMSF028A14+                                                AGCTAACGCAGGCCCGACTTTCC
JMSF038P14+                                                                     CC
JMSF042L13+                  TGCAGTCTTTAGGACAACGGTATTCCCACAAGCTAACGCAGGCCCGACTTTCC
                      ____________________________________________________________
consensus             TTTGCTCTGCAGTCTTTAGGACAACGGTATTCCCACAAGCTAACGCAGGCCCGACTTTCC
 
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JMSF044N12+           AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF028F10+           AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF028A14+           AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF038P14+           AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF042L13+           AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF051J20+                             GGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
                      ____________________________________________________________
consensus             AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
 
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JMSF044N12+           CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF028F10+           CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF028A14+           CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF038P14+           CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF042L13+           CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF051J20+           CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
                      ____________________________________________________________
consensus             CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
 
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JMSF044N12+           CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF028F10+           CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF028A14+           CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF038P14+           CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF042L13+           CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF051J20+           CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
                      ____________________________________________________________
consensus             CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
 
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JMSF044N12+           CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF028F10+           CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF028A14+           CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF038P14+           CCTGCTCGTATGGCTTCCCATTGTCCCATGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF042L13+           CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF051J20+           CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
                      ____________________________________________________________
consensus             CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
 
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JMSF044N12+           TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF028F10+           TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF028A14+           TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF038P14+           TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF042L13+           TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF051J20+           TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
                      ____________________________________________________________
consensus             TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
 
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JMSF044N12+           GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF028F10+           GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF002F23+                    CCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF028A14+           GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF038P14+           GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF042L13+           GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF018P02+                        ATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF051J20+           GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
                      ____________________________________________________________
consensus             GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
 
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JMSF044N12+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF028F10+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF002F23+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF028A14+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF038P14+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF042L13+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF018P02+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF051J20+           CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
                      ____________________________________________________________
consensus             CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
 
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JMSF044N12+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF028F10+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF002F23+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF028A14+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF038P14+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF042L13+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF018P02+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF051J20+           TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
                      ____________________________________________________________
consensus             TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
 
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JMSF044N12+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF028F10+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF002F23+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF028A14+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF038P14+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF042L13+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF018P02+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF051J20+           CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF013B20+                                            CTGCAGTGCTGAACCTTTGTATGCCAC
                      ____________________________________________________________
consensus             CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
 
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JMSF044N12+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF028F10+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF002F23+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF028A14+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF038P14+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF042L13+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF018P02+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF051J20+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF013B20+           TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
                      ____________________________________________________________
consensus             TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
 
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JMSF044N12+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF028F10+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTC  
JMSF002F23+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCT            
JMSF028A14+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTC  
JMSF038P14+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF042L13+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF018P02+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF051J20+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF013B20+           AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
                      ____________________________________________________________
consensus             AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
 
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JMSF044N12+           TTTTCAGATTTCTTTAATTTTTC                                     
JMSF038P14+           TTTTCAGATTTCTTT                                             
JMSF042L13+           TTTTCAGATTTCTTTAATTTTTCTTT                                  
JMSF018P02+           TTTTCAGATTTCTTTAATTTTTCTTT                                  
JMSF051J20+           TTTTCAGATTTCTTTAATTTTTCTTTGGGTTTTGT                         
JMSF013B20+           TTTTCAGATTTCTTTAATTTTTCTTTGGGTTTTGTGAATTGCCTGATTCTTATCTATACT
                      ____________________________________________________________
consensus             TTTTCAGATTTCTTTAATTTTTCTTTGGGTTTTGTGAATTGCCTGATTCTTATCTATACT
 
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JMSF013B20+           CTCCAACAAAATATGGCAACACTGATGGCAAGTAACAAGTTGACAACAGAGTGACAACTC
                      ____________________________________________________________
consensus             CTCCAACAAAATATGGCAACACTGATGGCAAGTAACAAGTTGACAACAGAGTGACAACTC