clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF002F23 | Sequence | 341 | 005372 (9) | gb:AY227203_1591057 | 6e-28 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | 757 | 012597 (9) | gb:AY227203_1591057 | 3e-84 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
JMSF013B20 | Sequence | 267 | 005372 (9) | 792 | 012597 (9) | gb:AY227203_1591057 | 2e-84 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | |||
JMSF018P02 | Sequence | 375 | 005372 (9) | gb:AY227203_1591057 | 2e-27 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | 737 | 012597 (9) | gb:AY227203_1591057 | 3e-98 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
JMSF028A14 | Sequence | 681 | 005372 (9) | gb:AY227203_1591057 | 8e-90 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | 789 | 012597 (9) | gb:AY227203_1591057 | 1e-91 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
JMSF028F10 | Sequence | 683 | 005372 (9) | gb:AY227203_1591057 | 8e-90 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | 791 | 012597 (9) | gb:AY227203_1591057 | 8e-91 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
JMSF038P14 | Sequence | 678 | 005372 (9) | gb:AY227203_1591057 | 7e-86 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | 851 | 012597 (9) | gb:AY227203_1591057 | e-114 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
JMSF042L13 | Sequence | 740 | 005372 (9) | gb:AY227203_1591057 | 1e-95 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | 841 | 012597 (9) | gb:AY227203_1591057 | e-112 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
JMSF044N12 | Sequence | 800 | 005372 (9) | gb:AY227203_1591057 | e-106 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds | 772 | 012597 (9) | gb:AY227203_1591057 | e-107 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
JMSF051J20 | Sequence | 678 | 005372 (9) | gb:AF269064_1782056 | 6e-82 | Zea mays T-cytoplasm male sterility restorer factor 2 (rf2) mRNA, rf2-R213 allel | 800 | 012597 (9) | gb:AY227203_1591057 | e-110 | Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds |
This contig is upended
. : . : . : . : . : . :
JMSF044N12+ GGGAGGAAGACCAGCCTCATGGAATAGTTTCCCAGCATAAAGTGCGGTTAATGGTG
____________________________________________________________
consensus GGGAGGAAGACCAGCCTCATGGAATAGTTTCCCAGCATAAAGTGCGGTTAATGGTG
. : . : . : . : . : . :
JMSF044N12+ TTTGCTCTGCAGTCTTTAGGACAACGGTATTCCCACAAGCTAACGCAGGCCCGACTTTCC
JMSF028F10+ AGCTAACGCAGGCCCGACTTTCC
JMSF028A14+ AGCTAACGCAGGCCCGACTTTCC
JMSF038P14+ CC
JMSF042L13+ TGCAGTCTTTAGGACAACGGTATTCCCACAAGCTAACGCAGGCCCGACTTTCC
____________________________________________________________
consensus TTTGCTCTGCAGTCTTTAGGACAACGGTATTCCCACAAGCTAACGCAGGCCCGACTTTCC
. : . : . : . : . : . :
JMSF044N12+ AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF028F10+ AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF028A14+ AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF038P14+ AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF042L13+ AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
JMSF051J20+ GGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
____________________________________________________________
consensus AAGCAAACATGGCAAGAGGGAAGTTCCATGGGATAATTTGGCCAGCAACTCCTATTGGTT
. : . : . : . : . : . :
JMSF044N12+ CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF028F10+ CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF028A14+ CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF038P14+ CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF042L13+ CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
JMSF051J20+ CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
____________________________________________________________
consensus CATGCAAGGTTTGGACATGGTGTGGTCCGTCAGCTGGAACTGTTAAACCATGGATTTTAT
. : . : . : . : . : . :
JMSF044N12+ CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF028F10+ CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF028A14+ CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF038P14+ CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF042L13+ CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
JMSF051J20+ CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
____________________________________________________________
consensus CCGCCCATCCTGCATAGTAGTGAAATAGGCGTACAATCATGGGCAACTCTGATTTAGCAG
. : . : . : . : . : . :
JMSF044N12+ CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF028F10+ CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF028A14+ CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF038P14+ CCTGCTCGTATGGCTTCCCATTGTCCCATGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF042L13+ CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
JMSF051J20+ CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
____________________________________________________________
consensus CCTGCTCGTATGGCTTCCCATTGTCCCACGTCTCCAATGTTGCAAGTTCATCCATGTGTT
. : . : . : . : . : . :
JMSF044N12+ TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF028F10+ TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF028A14+ TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF038P14+ TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF042L13+ TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
JMSF051J20+ TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
____________________________________________________________
consensus TCTCGACCAAATCAGCAAACTTCAACATTATCCGCGATCTCTCATATGCACTCATTTTGG
. : . : . : . : . : . :
JMSF044N12+ GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF028F10+ GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF002F23+ CCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF028A14+ GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF038P14+ GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF042L13+ GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF018P02+ ATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
JMSF051J20+ GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
____________________________________________________________
consensus GCCAAGGTCCCTCATCGAAAGCCTTGCGGGCAGCTGCTACAGCGCGGTTTATATCTTCCG
. : . : . : . : . : . :
JMSF044N12+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF028F10+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF002F23+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF028A14+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF038P14+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF042L13+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF018P02+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
JMSF051J20+ CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
____________________________________________________________
consensus CTTCACCCTCTGCTACATGTGCAATGACATCTTCAGTTCTCGGATCCAAGGTTGGGAATG
. : . : . : . : . : . :
JMSF044N12+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF028F10+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF002F23+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF028A14+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF038P14+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF042L13+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF018P02+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
JMSF051J20+ TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
____________________________________________________________
consensus TTTTTCCAGAAGCTGAATCTACAAATTTGCCATTGATTATATGTTGGGTGTATTTAACTT
. : . : . : . : . : . :
JMSF044N12+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF028F10+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF002F23+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF028A14+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF038P14+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF042L13+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF018P02+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF051J20+ CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
JMSF013B20+ CTGCAGTGCTGAACCTTTGTATGCCAC
____________________________________________________________
consensus CCACAGCCGGAGAAACTAACTCCTCAACTGCGGCTGCAGTGCTGAACCTTTGTATGCCAC
. : . : . : . : . : . :
JMSF044N12+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF028F10+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF002F23+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF028A14+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF038P14+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF042L13+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF018P02+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF051J20+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
JMSF013B20+ TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
____________________________________________________________
consensus TTTCTACACCATACTTCCACCCCAGAAAAGCAGATGCAGAAGGAAAAGAGAGTGAACGAG
. : . : . : . : . : . :
JMSF044N12+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF028F10+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTC
JMSF002F23+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCT
JMSF028A14+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTC
JMSF038P14+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF042L13+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF018P02+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF051J20+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
JMSF013B20+ AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
____________________________________________________________
consensus AAAGCAAGGTAGAAAGTCTGCGAGAAGCCATTTTTGTGCTCTCAACCTTAGCTTCTTCAC
. : . : . : . : . : . :
JMSF044N12+ TTTTCAGATTTCTTTAATTTTTC
JMSF038P14+ TTTTCAGATTTCTTT
JMSF042L13+ TTTTCAGATTTCTTTAATTTTTCTTT
JMSF018P02+ TTTTCAGATTTCTTTAATTTTTCTTT
JMSF051J20+ TTTTCAGATTTCTTTAATTTTTCTTTGGGTTTTGT
JMSF013B20+ TTTTCAGATTTCTTTAATTTTTCTTTGGGTTTTGTGAATTGCCTGATTCTTATCTATACT
____________________________________________________________
consensus TTTTCAGATTTCTTTAATTTTTCTTTGGGTTTTGTGAATTGCCTGATTCTTATCTATACT
. : . : . : . : . : . :
JMSF013B20+ CTCCAACAAAATATGGCAACACTGATGGCAAGTAACAAGTTGACAACAGAGTGACAACTC
____________________________________________________________
consensus CTCCAACAAAATATGGCAACACTGATGGCAAGTAACAAGTTGACAACAGAGTGACAACTC