Previous Contig 005308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS140B03Sequence641005308 (6)gb:AC097368_17366541e-75Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.
JMSF011F16Sequence245005308 (6)gb:AC097368_17366542e-16Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.720011882 (6)pir|T48625|T486251e-56pescadillo-like protein - Arabidopsis thaliana>gb:ATT15N1_1554525 Arabidopsis th
JMSF012E22Sequence234005308 (6)gb:AC097368_17366542e-13Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.793011882 (6)pir|T48625|T486251e-66pescadillo-like protein - Arabidopsis thaliana>gb:ATT15N1_1554525 Arabidopsis th
JMSF016F19Sequence243005308 (6)gb:AC097368_17366543e-17Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.757011882 (6)pir|T48625|T486259e-59pescadillo-like protein - Arabidopsis thaliana>gb:ATT15N1_1554525 Arabidopsis th
JMSF017F15Sequence535005308 (6)gb:AC097368_17366545e-56Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.731011882 (6)pir|T48625|T486256e-58pescadillo-like protein - Arabidopsis thaliana>gb:ATT15N1_1554525 Arabidopsis th
JMSF040J24Sequence672005308 (6)gb:AC097368_17366545e-79Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.862011882 (6)pir|T48625|T486255e-73pescadillo-like protein - Arabidopsis thaliana>gb:ATT15N1_1554525 Arabidopsis th

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS140B03+ CC
JMSF040J24+ CCTGATAATATATTCC
                      ____________________________________________________________
consensus CCTGATAATATATTCC
 
. : . : . : . : . : . :
JMFS140B03+ TTTTACAGATATAAATGTTTTTCGCAGTTTGTGGGTGCGAGAAACATAAGCTTGCCACTC
JMSF040J24+ TTTTACAGATATAAATGTTTTTCGCAGTTTGTGGGTGCGAGAAACATAAGCTTGCCACTC
                      ____________________________________________________________
consensus TTTTACAGATATAAATGTTTTTCGCAGTTTGTGGGTGCGAGAAACATAAGCTTGCCACTC
 
. : . : . : . : . : . :
JMFS140B03+ ATGACTTAACCTTCGACAGTTATGAATGCGGTTTACTGGAATATTTTCCCTTTCTACAGC
JMSF017F15+ TACAGC
JMSF040J24+ ATGACTTAACCTTCGACAGTTATGAATGCGGTTTACTGGAATATTTTCCCTTTCTACAGC
                      ____________________________________________________________
consensus ATGACTTAACCTTCGACAGTTATGAATGCGGTTTACTGGAATATTTTCCCTTTCTACAGC
 
. : . : . : . : . : . :
JMFS140B03+ AGGCAATGCAGCAAAAAGATGAACCATACTCAGACAATCATCCAAATCCCTCAACGCATC
JMSF017F15+ AGGCAATGCAGCAAAAAGATGAACCATACTCAGACAATCATCCAAATCCCTCAACGCATC
JMSF040J24+ AGGCAATGCAGCAAAAAGATGAACCATACTCAGACAATCATCCAAATCCCTCAACGCATC
                      ____________________________________________________________
consensus AGGCAATGCAGCAAAAAGATGAACCATACTCAGACAATCATCCAAATCCCTCAACGCATC
 
. : . : . : . : . : . :
JMFS140B03+ AATGAATGTAGGGTACCTCTCTCGAATAAGCAAATCTAAATTATAGCCAGGCTTGCTAGA
JMSF017F15+ AATGAATGTAGGGTACCTCTCTCGAATAAGCAAATCTAAATTATAGCCAGGCTTGCTAGA
JMSF040J24+ AATGAATGTAGGGTACCTCTCTCGAATAAGCAAATCTAAATTATAGCCAGGCTTGCTAGA
                      ____________________________________________________________
consensus AATGAATGTAGGGTACCTCTCTCGAATAAGCAAATCTAAATTATAGCCAGGCTTGCTAGA
 
. : . : . : . : . : . :
JMFS140B03+ CAATAGACGTTCAGCAAGATCCTTGTTCTTTTTTGACACAGCTTTCTTAACTTTTCTATC
JMSF017F15+ CAATAGACGTTCAGCAAGATCCTTGTTCTTTTTTGACACAGCTTTCTTAACTTTTCTATC
JMSF040J24+ CAATAGACGTTCAGCAAGATCCTTGTTCTTTTTTGACACAGCTTTCTTAACTTTTCTATC
                      ____________________________________________________________
consensus CAATAGACGTTCAGCAAGATCCTTGTTCTTTTTTGACACAGCTTTCTTAACTTTTCTATC
 
. : . : . : . : . : . :
JMFS140B03+ ATAAGCCCGAATATCTCTGAACTTCTCAAGCAATGGCTCATATTTAAGGAACTTAATATC
JMSF017F15+ ATAAGCCCGAATATCTCTGAACTTCTCAAGCAATGGCTCATATTTAAGGAACTTAATATC
JMSF040J24+ ATAAGCCCGAATATCTCTGAACTTCTCAAGCAATGGCTCATATTTAAGGAACTTAATATC
                      ____________________________________________________________
consensus ATAAGCCCGAATATCTCTGAACTTCTCAAGCAATGGCTCATATTTAAGGAACTTAATATC
 
. : . : . : . : . : . :
JMFS140B03+ TTTTGTGTGATAATAGGTTTGATGATTTCCTTTCACCTTCTTCTTTGGGTCCCGTGGAAA
JMSF017F15+ TTTTGTGTGATAATAGGTTTGATGATTTCCTTTCACCTTCTTCTTTGGGTCCCGTGGAAA
JMSF016F19+ GGGTCCCGTGGAAA
JMSF040J24+ TTTTGTGTGATAATAGGTTTGATGATTTCCTTTCACCTTCTTCTTTGGGTCCCGTGGAAA
JMSF011F16+ CCGTGGAAA
                      ____________________________________________________________
consensus TTTTGTGTGATAATAGGTTTGATGATTTCCTTTCACCTTCTTCTTTGGGTCCCGTGGAAA
 
. : . : . : . : . : . :
JMFS140B03+ TATACCTTTGAGGATGCATAGCTTCCTGAATAGTGATATGCTGATTTGGAGTTCCTTAAG
JMSF017F15+ TATACCTTTGAGGATGCATAGCTTCCTGAATAGTGATATGCTGATTTGGAGTTCCTTAAG
JMSF016F19+ TATACCTTTGAGGATGCATAGCTTCCTGAATAGTGATATGCTGATTTGGAGTTCCTTAAG
JMSF040J24+ TATACCTTTGAGGATGCATAGCTTCCTGAATAGTGATATGCTGATTTGGAGTTCCTTAAG
JMSF011F16+ TATACCTTTGAGGATGCATAGCTTCCTGAATAGTGATATGCTGATTTGGAGTTCCTTAAG
JMSF012E22+ TTTGAGGATGCATAGCTTCCTGAATAGTGATATGCTGATTTGGAGTTCCTTAAG
                      ____________________________________________________________
consensus TATACCTTTGAGGATGCATAGCTTCCTGAATAGTGATATGCTGATTTGGAGTTCCTTAAG
 
. : . : . : . : . : . :
JMFS140B03+ AGCTTTTGACCTAGTTATGTATCTGGAAGCGTTTCCTTCCTTTTTCTTGCCCGCAGGCCT
JMSF017F15+ AGCTTTTGACCTAGTTATGTATCTGGAAGCGTTTCCTTCCTTTTTCTTGCCCGCAGGCCT
JMSF016F19+ AGCTTTTGACCTAGTTATGTATCTGGAAGCGTTTCCTTCCTTTTTCTTGCCCGCAGGCCT
JMSF040J24+ AGCTTTTGACCTAGTTATGTATCTGGAAGCGTTTCCTTCCTTTTTCTTGCCCGCAGGCCT
JMSF011F16+ AGCTTTTGACCTAGTTATGTATCTGGAAGCGTTTCCTTCCTTTTTCTTGCCCGCAGGCCT
JMSF012E22+ AGCTTTTGACCTAGTTATGTATCTGGAAGCGTTTCCTTCCTTTTTCTTGCCCGCAGGCCT
                      ____________________________________________________________
consensus AGCTTTTGACCTAGTTATGTATCTGGAAGCGTTTCCTTCCTTTTTCTTGCCCGCAGGCCT
 
. : . : . : . : . : . :
JMFS140B03+ GAAGTGCTTAGGCATGGCTGCGGATTCGAGCTGTGAAGGAAGAGGGCGAGCCTCGACGGG
JMSF017F15+ GAAGTGCTTAGGCATGGCTGCGGATTCGAGCTGTGAAGGAAGAGGGCGAGCCTCGACGGG
JMSF016F19+ GAAGTGCTTAGGCATGGCTGCGGATTCGAGCTGTGAAGGAAGAGGGCGAGCCTCGACGGG
JMSF040J24+ GAAGTGCTTAGGCATGGCTGCGGATTCGAGCTGTGAAGGAAGAGGGCGAGCCTCGACGGG
JMSF011F16+ GAAGTGCTTAGGCATGGCTGCGGATTCGAGCTGTGAAGGAAGAGGGCGAGCCTCGACGGG
JMSF012E22+ GAAGTGCTTAGGCATGGCTGCGGATTCGAGCTGTGAAGGAAGAGGGCGAGCCTCGACGGG
                      ____________________________________________________________
consensus GAAGTGCTTAGGCATGGCTGCGGATTCGAGCTGTGAAGGAAGAGGGCGAGCCTCGACGGG
 
. : . : . : . : . : . :
JMFS140B03+ ACACGGGAGTACTTGAGGCAGATGAAGCTTCCGTTTTTC
JMSF017F15+ ACACGGGAGTACTTGAGGCAGATGAAGCTTCCGTTTTTCTGTCGGCTC
JMSF016F19+ ACACGGGAGTACTTGAGGCAGATGAAGCTTCCGTTTTTCTGTCGGCTC
JMSF040J24+ ACACGGGAGTACTTGAGGCAGATGAAGCTTCCGTTTTTCTGTCGGCTC
JMSF011F16+ ACACGGGAGTACTTGAGGCAGATGAAGCTTCCGTTTTTCTGTCGGCTC
JMSF012E22+ ACACGGGAGTACTTGAGGCAGATGAAGCTTCCGTTTTTCTGTCGGCTCGAGCCGCAAGTC
                      ____________________________________________________________
consensus ACACGGGAGTACTTGAGGCAGATGAAGCTTCCGTTTTTCTGTCGGCTCGAGCCGCAAGTC