Previous Contig 005218:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035F18Sequence306005218 (8)sp|Q43019|NLT3_PRUDU3e-11Nonspecific lipid-transfer protein 3 precursor (LTP 3).>gb:PALTP3_1698739 P.amyg375005218 (8)sp|Q9M5X8|NLTP_PRUAV2e-10Nonspecific lipid-transfer protein precursor (LTP) (Allergen Pru av 3).>gb:AF221
JMFN007M24Sequence292005218 (8)sp|P82534|NLT1_PRUDO2e-06Nonspecific lipid-transfer protein 1 (LTP 1) (Major allergen Pru d 3).
JMFN014G16Sequence607005218 (8)sp|Q9M5X8|NLTP_PRUAV8e-29Nonspecific lipid-transfer protein precursor (LTP) (Allergen Pru av 3).>gb:AF221
JMFN035F03Sequence564005218 (8)sp|Q9M5X8|NLTP_PRUAV7e-29Nonspecific lipid-transfer protein precursor (LTP) (Allergen Pru av 3).>gb:AF221
JMFN046F21Sequence196005218 (8)
JMFS169F04Sequence590005218 (8)sp|Q9M5X8|NLTP_PRUAV8e-29Nonspecific lipid-transfer protein precursor (LTP) (Allergen Pru av 3).>gb:AF221
JMSF011D21Sequence318005218 (8)gb:AF439280_17999342e-13Retama raetam lipid transfer protein-like protein mRNA, complete cds.141022417

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN007M24+ ATATATATATAT
JMFN035F03+ ATATATATATAT
                      ____________________________________________________________
consensus ATATATATATAT
 
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JMFN007M24+ ATATATATATATATATATATATATCTATATATATATATATATATATATATATATAAAACA
rJMFF035F18- ATATATATATATATATATATATAAAACA
JMFN035F03+ ATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAACA
JMFS169F04+ ATATATATATATATATATATATAAACCA
JMFN014G16+ ATATATATATATATATATATATAAAACA
                      ____________________________________________________________
consensus ATATATATATATATATATATATATCTATATATATATATATATATATATATATATAAAACA
 
. : . : . : . : . : . :
JMFN007M24+ AGAGCTGCTCTCAAGGAGTCTGTACGCCATAGATGGAGAATCTTCTTTTTTCCTCTTATT
rJMFF035F18- AGAGCTGCACTCNNGGAGTCTGTACGCCATANCTGGAGAATCTTCTTTTTTCCTCTTATT
JMFN035F03+ AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
JMFS169F04+ AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
JMFN014G16+ AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
                      ____________________________________________________________
consensus AGAGCTGCACTCAAGGAGTCTGTACGCCATAGCTGGAGAATCTTCTTTTTTCCTCTTATT
 
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JMFN007M24+ TAATCAACTCCATGATGCAGCATTAATCGTCTTTTCATGATTAATGCACCGTTGCGCAGT
rJMFF035F18- TAACCAACTCCATGATGCAGCATTTATCGTCTTCTCNTGCTTACTGCACCGTTGCGCAGT
JMFN035F03+ TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
JMFS169F04+ TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
JMFN014G16+ TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
                      ____________________________________________________________
consensus TAATCAACTCCATGATGCAGCATTTATCGTCTTCTCATGCTTACTGCACCGTTGCGCAGT
 
. : . : . : . : . : . :
JMFN007M24+ TAATGGAGAGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTAT-GGGGGAGGGCGGCG
rJMFF035F18- TANTGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTTGGGGGGAGGGCGGCG
JMFN035F03+ TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
JMFS169F04+ TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
JMFN014G16+ TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
                      ____________________________________________________________
consensus TAATGGAGGGGGTGATCTTGTAGGGAAGGGTAACGCCACATTTTT-GGGGGAGGGCGGCG
 
. : . : . : . : . : . :
JMFN007M24+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTT
rJMFF035F18- GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCANTTGCAAACG
JMFN035F03+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
JMFS169F04+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
JMFN014G16+ GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
JMFF035F18+ TTGCAAACG
JMSF011D21+ TTCATGCAGTTGCAAACG
                      ____________________________________________________________
consensus GCCAGGTCGAGCCTCACGCCGGGGACAGAGCCGGCGGCGTTCTTCATGCAGTTGCAAACG
 
. : . : . : . : . : . :
rJMFF035F18- GTCTGGCGGTCGGCGGTGGTGGC
JMFN035F03+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMFS169F04+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMFN014G16+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMFF035F18+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
JMSF011D21+ GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
                      ____________________________________________________________
consensus GTCTGGCGGTCGGCGGTGGTGGCGGCGGATCTATAGAGGGATCTGATCCCGTCGCAGCAG
 
. : . : . : . : . : . :
JMFN035F03+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMFS169F04+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMFN014G16+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMFN046F21- GTCGGTTACT
JMFF035F18+ TTCATCGGANCCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
JMSF011D21+ TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
                      ____________________________________________________________
consensus TTCATCGGAACCGCACCGCCGTTCCTCACGTAGTCCAGGCACGGGTACAAGTCGGTTACT
 
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JMFN035F03+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFS169F04+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFN014G16+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFN046F21- ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMFF035F18+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
JMSF011D21+ ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
                      ____________________________________________________________
consensus ACGGTGCCACACGACATGGACTGTGCATTCAGGCCAACCATCATCGCCGCCACCGCCACC
 
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JMFN035F03+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMFS169F04+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMFN014G16+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMFN046F21- ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAA
JMFF035F18+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
JMSF011D21+ ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
                      ____________________________________________________________
consensus ACCACCATCCACGCCGCTTTTGCCATTAGACCGCCGGTAATTTTGTTGAAATAGAGACTT
 
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JMFN035F03+ AATTAGCTTGGAG
JMFS169F04+ AATTAGCTTGGAGAAA
JMFN014G16+ AATTAGCTTGGAGAAA
JMFF035F18+ AATTAGCTTGGAGAAAGGTTTAGAATTGGAAGGGAAAGGAAGTAGAATGCTTTGTGT
JMSF011D21+ AATTAGCTTGGAGAAAGGTTTAGAATTGGAAGGGAAAGGAAGTAGAATGCTTTGTGTGTC
                      ____________________________________________________________
consensus AATTAGCTTGGAGAAAGGTTTAGAATTGGAAGGGAAAGGAAGTAGAATGCTTTGTGTGTC