Previous Contig 005217:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033I24Sequence544005217 (6)gb:AY063068_15656457e-44Arabidopsis thaliana unknown protein (At1g12730) mRNA, complete cds.>gb:AF370252386011623 (3)gb:AY065088_15662424e-23Arabidopsis thaliana unknown protein (At1g63110) mRNA, complete cds.>gb:AY128722
JMFF049P01Sequence638005217 (6)gb:AY063068_15656451e-53Arabidopsis thaliana unknown protein (At1g12730) mRNA, complete cds.>gb:AF370252570011623 (3)gb:AP004096_18376683e-46Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ17
JMFS069B05Sequence627005217 (6)gb:AY063068_15656452e-54Arabidopsis thaliana unknown protein (At1g12730) mRNA, complete cds.>gb:AF370252
JMSF011D17Sequence340005217 (6)gb:AY063068_15656451e-21Arabidopsis thaliana unknown protein (At1g12730) mRNA, complete cds.>gb:AF370252764011623 (3)gb:AY065088_15662424e-64Arabidopsis thaliana unknown protein (At1g63110) mRNA, complete cds.>gb:AY128722
JMSF019E07Sequence321005217 (6)gb:AY063068_15656453e-21Arabidopsis thaliana unknown protein (At1g12730) mRNA, complete cds.>gb:AF370252777022861gb:AY065088_15662421e-73Arabidopsis thaliana unknown protein (At1g63110) mRNA, complete cds.>gb:AY128722
JMSF052G21Sequence713005217 (6)gb:AY063068_15656452e-56Arabidopsis thaliana unknown protein (At1g12730) mRNA, complete cds.>gb:AF370252869004265 (6)gb:AY065088_15662425e-65Arabidopsis thaliana unknown protein (At1g63110) mRNA, complete cds.>gb:AY128722

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF052G21+ CCGGACCATAGCCTAATAGAAGAATCACTGGTACAATTAGAACTGCAGGATAAA
                      ____________________________________________________________
consensus CCGGACCATAGCCTAATAGAAGAATCACTGGTACAATTAGAACTGCAGGATAAA
 
. : . : . : . : . : . :
JMFF049P01+ GTCCAACCAAAAGCTGCCAATGGAGCAAGTCCTNTGCAGG
JMFS069B05+ GTCCAACCAAAAGCTGCCAATGGAGCAAGTCCTNTGCAGG
JMSF052G21+ GAGACAAATGGGATGCTACGGTCCAACCAAAAGCTGCCAATGGAGCAAGTCCTTTGCAGG
                      ____________________________________________________________
consensus GAGACAAATGGGATGCTACGGTCCAACCAAAAGCTGCCAATGGAGCAAGTCCTTTGCAGG
 
. : . : . : . : . : . :
JMFF049P01+ CCCCATAAATGGAAATGATTACAAACATATNTTCTAGAGGTGTTGTGTTGAAACCCATGC
JMFS069B05+ CCCCATAAATGGAAATGATTACAAACATATTTTCTAGAGGTGTTGTGTTGAAACCCATGC
JMFF033I24+ CCCATGC
JMSF052G21+ CCCCATAAATGGAAATGATTACAAACATATTTTCTAGAGGTGTTGTGTTGAAACCCATGC
                      ____________________________________________________________
consensus CCCCATAAATGGAAATGATTACAAACATATTTTCTAGAGGTGTTGTGTTGAAACCCATGC
 
. : . : . : . : . : . :
JMFF049P01+ ACGTAACTATAGTGAAAGGGTTCCATAAGTACACAAGAGCAGCAATGTCTCCAGAGGGCA
JMFS069B05+ ACGTAACTATAGTGAAAGGGTTCCATAAGTACACAAGAGCAGCAATGTCTCCAGAGGGCA
JMFF033I24+ ACGTAACTATAGTGAAAGGGTTCCATAAGTACACAAGAGCAGCAATGTCTCCAGAGGGCA
JMSF052G21+ ACGTAACTATAGTGAAAGGGTTCCATAAGTACACAAGAGCAGCAATGTCTCCAGAGGGCA
                      ____________________________________________________________
consensus ACGTAACTATAGTGAAAGGGTTCCATAAGTACACAAGAGCAGCAATGTCTCCAGAGGGCA
 
. : . : . : . : . : . :
JMFF049P01+ GAATATCTGAATCTTCAAAGAGCTTGCCCAGCCCCAGTGATTTTAAACTCTTCTCAGATG
JMFS069B05+ GAATATCTGAATCTTCAAAGAGCTTGCCCAGCCCCAGTGATTTTAAACTCTTCTCAGATG
JMFF033I24+ GAATATCTGAATCTTCAAAGAGCTTGCCCAGCCCCAGTGATTTTAAACTCTTCTCAGATG
JMSF052G21+ GAATATCTGAATCTTCAAAGAGCTTGCCCAGCCCCAGTGATTTTAAACTCTTCTCAGATG
                      ____________________________________________________________
consensus GAATATCTGAATCTTCAAAGAGCTTGCCCAGCCCCAGTGATTTTAAACTCTTCTCAGATG
 
. : . : . : . : . : . :
JMFF049P01+ CCCGTTGAAGACTCTGACCAGTTGCACGAATAAGCATAGCAGAGATAAAATCTGCAACAA
JMFS069B05+ CCCGTTGAAGACTCTGACCAGTTGCACGAATAAGCATAGCAGAGATAAAATCTGCAACAA
JMFF033I24+ CCCGTTGAAGACTCTGACCAGTTGCACGAATAAGCATAGCAGAGATAAAATCTGCAACAA
JMSF052G21+ CCCGTTGAAGACTCTGACCAGTTGCACGAATAAGCATAGCAGAGATAAAATCTGCAACAA
                      ____________________________________________________________
consensus CCCGTTGAAGACTCTGACCAGTTGCACGAATAAGCATAGCAGAGATAAAATCTGCAACAA
 
. : . : . : . : . : . :
JMSF019E07+ TCCGTCAATTTTGTTGCCAGTGAGGG
JMFF049P01+ CCAAAACCAAACTGCATAATAGATGGTAAGAGTGTCCGTCAATTTTGTTGCCAGTGAGGG
JMFS069B05+ CCAAAACCAAACTGCATAATAGATGGTAAGAGTGTCCGTCAATTTTGTTGCCAGTGAGGG
JMFF033I24+ CCAAAACCAAACTGCATAATAGATGGTAAGAGTGTCCGTCAATTTTGTTGCCAGTGAGGG
JMSF052G21+ CCAAAACCAAACTGCATAATAGATGGTAAGAGTGTCCGTCAATTTTGTTGCCAGTGAGGG
JMSF011D17+ AGATNGTAAGAGTGTCCGTCAATTTTGTTGCCAGTGAGGG
                      ____________________________________________________________
consensus CCAAAACCAAACTGCATAATAGATGGTAAGAGTGTCCGTCAATTTTGTTGCCAGTGAGGG
 
. : . : . : . : . : . :
JMSF019E07+ GGCCGAGAGCTGCGAGCAACAATGGAGATCCGTGGTACATAGAGCCAGCATAAGGCGACA
JMFF049P01+ GGCCGAGAGCTGCGAGCAACAATGGAGATCCGTGGTACATAGAGCCAGCATAAGGCGACA
JMFS069B05+ GGCCGAGAGCTGCGAGCAACAATGGAGATCCGTGGTACATAGAGCCAGCATAAGGCGACA
JMFF033I24+ GGCCGAGAGCTGCGAGCAACAATGGAGATCCGTGGTACATAGAGCCAGCATAAGGCGACA
JMSF052G21+ GGCCGAGAGCTGCGAGCAACAATGGAGATCCGTGGTACATAGAGCCAGCATAAGGCGACA
JMSF011D17+ GGCCGAGAGCTGCGAGCAACAATGGAGATCCGTGGTACATAGAGCCAGCATAAGGCGACA
                      ____________________________________________________________
consensus GGCCGAGAGCTGCGAGCAACAATGGAGATCCGTGGTACATAGAGCCAGCATAAGGCGACA
 
. : . : . : . : . : . :
JMSF019E07+ TTGACGACTGCTTCAACCAGTAGCCTTCCGCCAGGCGGCGGAGGCTGGTGACGGGAGTGG
JMFF049P01+ TTGACGACTGCTTCAACCAGTAGCCTTCCGCCAGGCGGCGGAGGCTGGTGACGGGAGTGG
JMFS069B05+ TTGACGACTGCTTCAACCAGTAGCCTTCCGCCAGGCGGCGGAGGCTGGTGACGGGAGTGG
JMFF033I24+ TTGACGACTGCTTCAACCAGTAGCCTTCCGCCAGGCGGCGGAGGCTGGTGACGGGAGTGG
JMSF052G21+ TTGACGACTGCTTCAACCAGTAGCCTTCCGCCAGGCGGCGGAGGCTGGTGACGGGAGTGG
JMSF011D17+ TTGACGACTGCTTCAACCAGTAGCCTTCCGCCAGGCGGCGGAGGCTGGTGACGGGAGTGG
                      ____________________________________________________________
consensus TTGACGACTGCTTCAACCAGTAGCCTTCCGCCAGGCGGCGGAGGCTGGTGACGGGAGTGG
 
. : . : . : . : . : . :
JMSF019E07+ AGACTTCCGGGCGAGTTGCGAAGTTGAGATTTTTGGGGAAGTATATCAGAACTAATCTGA
JMFF049P01+ AGACTTCCGGGCGAGTTGCGAAGTTGAGATTTTTGGGGAAGTATATCAGAACTAATCTGA
JMFS069B05+ AGACTTCCGGGCGAGTTGCGAAGTTGAGATTTTTGGGGAAGTATATCAGAACTAATCTGA
JMFF033I24+ AGACTTCCGGGCGAGTTGCGAAGTTGAGATTTTTGGGGAAGTATATCAGAACTAATCTGA
JMSF052G21+ AGACTTCCGGGCGAGTTGCGAAGTTGAGATTTTTGGGGAAGTATATCAGAACTAATCTGA
JMSF011D17+ AGACTTCCGGGCGAGTTGCGAAGTTGAGATTTTTGGGGAAGTATATCAGAACTAATCTGA
                      ____________________________________________________________
consensus AGACTTCCGGGCGAGTTGCGAAGTTGAGATTTTTGGGGAAGTATATCAGAACTAATCTGA
 
. : . : . : . : . : . :
JMSF019E07+ ACACGATTGACGCCGCCGCCCATCTCCAAAATTGCGGTTTCGGCTTCGGCTTTGCCTTCT
JMFF049P01+ ACACGATTGACGCCGCCGCCCATCTCCAAAATTGCGGTTTCGGCTTCGGCTTTGCCTTCT
JMFS069B05+ ACACGATTGACGCCGCCGCCCATCTCCAAAATTGCGGTTTCGGCTTCGGCTTTGCCTTCT
JMFF033I24+ ACACGATTGACGCCGCCGCCCATCTCCAAAATTGCGGTTTCGGCTTCGGCTTTGCCTTCT
JMSF052G21+ ACACGATTGACGCCGCCGCCCATCTCCAAAATTGCGGTTTCGGCTTCGGCTTTGCCTTCT
JMSF011D17+ ACACGATTGACGCCGCCGCCCATCTCCAAAATTGCGGTTTCGGCTTCGGCTTTGCCTTCT
                      ____________________________________________________________
consensus ACACGATTGACGCCGCCGCCCATCTCCAAAATTGCGGTTTCGGCTTCGGCTTTGCCTTCT
 
. : . : . : . : . : . :
JMSF019E07+ TCCGGCTCGCTTCCATTTGCGCAACTCTCGTGGATCAGACGAGCTCAGGCTGCC
JMFF049P01+ TCCGGCTCGCTTCCATTTGCGCAACTCTCGTGGATCAGACGAGCTCAGGCTGCCA
JMFS069B05+ TCCGGCTCGCTTCCATTTGCGCAACTCTCGTGGATCAGACGAGCTCA
JMFF033I24+ TCCGGCTCGCTTCCATTTGCGCAACTCTCGTGGATCAGACGAGCTCAGGCGGCCA
JMSF052G21+ TCCGGCTCGCTTCCATTTGCGCAACTCTCGTGGATCAGACGAGCTCAGGCTGCCA
JMSF011D17+ TCCGGCTCGCTTCCATTTGCGCAACTCTCGTGGATCAGACGAGCTCAGGCTGCCAGATTC
                      ____________________________________________________________
consensus TCCGGCTCGCTTCCATTTGCGCAACTCTCGTGGATCAGACGAGCTCAGGCTGCCAGATTC