Previous Contig 005201:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011A14Sequence287005201 (2)775011609 (3)gb:AP003513_18301761e-20Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P069
JMSF017C02Sequence390005201 (2)673011609 (3)gb:AP003513_18301765e-17Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P069

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF017C02+ CAGCCATTGCCTTCGCCAGCGGGTAGGAGCA
                      ____________________________________________________________
consensus CAGCCATTGCCTTCGCCAGCGGGTAGGAGCA
 
. : . : . : . : . : . :
JMSF017C02+ TCCTAGCAAACGAAAATCCCGGCTTTCCGACCATTGCAACTCTGAAAAAGATCGTATCTT
                      ____________________________________________________________
consensus TCCTAGCAAACGAAAATCCCGGCTTTCCGACCATTGCAACTCTGAAAAAGATCGTATCTT
 
. : . : . : . : . : . :
JMSF017C02+ TTGTTCCTTTTATGAGTTTATCAATGTACAGGCCCAGAAGAACACAAGCATTTGGGGATT
JMSF011A14+ GAGTTTATCAATGTACAGGCCCAGAAGAACACAAGCATTTGGGGATT
                      ____________________________________________________________
consensus TTGTTCCTTTTATGAGTTTATCAATGTACAGGCCCAGAAGAACACAAGCATTTGGGGATT
 
. : . : . : . : . : . :
JMSF017C02+ TTTCGTATAAAGCCTTTCGTCGAACACCTTGCCTGCAATCACTTCCAAACTCCAACAAAC
JMSF011A14+ TTTCGTATAAAGCCTTTCGTCGAACACCTTGCCTGCAATCACTTCCAAACTCCAACAAAC
                      ____________________________________________________________
consensus TTTCGTATAAAGCCTTTCGTCGAACACCTTGCCTGCAATCACTTCCAAACTCCAACAAAC
 
. : . : . : . : . : . :
JMSF017C02+ TTCCACTGATTTATGCAGCGTTTGGATTCAATCAGCAAGGTGGACCTCCATATTAAGTGC
JMSF011A14+ TTCCACTGATTTATGCAGCGTTTGGATTCAATCAGCAAGGTGGACCTCCATATTAAGTGC
                      ____________________________________________________________
consensus TTCCACTGATTTATGCAGCGTTTGGATTCAATCAGCAAGGTGGACCTCCATATTAAGTGC
 
. : . : . : . : . : . :
JMSF017C02+ TTAATAATAAACGAAAGAGGTTTTAAGAAGCC-AAAAATGGAGGGAGAAGACCGCCGGTC
JMSF011A14+ TTAATAATAAACGAAAGAGGTTTTAAGAAGCCAAAAAATGGAGGGAGAAGACCGCCGGTC
                      ____________________________________________________________
consensus TTAATAATAAACGAAAGAGGTTTTAAGAAGCCAAAAAATGGAGGGAGAAGACCGCCGGTC
 
. : . : . : . : . : . :
JMSF017C02+ GCCGCCGCAGGACTGGCTGCGAGAAACCAAACGGATACTCACAAATGTTCGGCCAACGTC
JMSF011A14+ GCCGCCGCAGGACTGGCTGCGAGAAACCAAACGGATACTCACAAATGTTCGGCCAACGTC
                      ____________________________________________________________
consensus GCCGCCGCAGGACTGGCTGCGAGAAACCAAACGGATACTCACAAATGTTCGGCCAACGTC