Previous Contig 005172:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003F24Sequence547005172 (2)gb:AY065026_15661871e-25Arabidopsis thaliana AT5g53140/MFH8_8 mRNA, complete cds.>gb:AY133656_1581479 Ar708008269 (2)gb:AC098598_17367818e-46Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete s
JMSF010K06Sequence408005172 (2)743008269 (2)gb:AY045819_15613331e-48Arabidopsis thaliana putative protein phosphatase 2C (At5g53140) mRNA, complete

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF003F24+ GGCCATCAA
                      ____________________________________________________________
consensus GGCCATCAA
 
. : . : . : . : . : . :
JMFF003F24+ ATATCCCAAACAAACAAATTGTCTTTCCATCAATCTTGGAAGTCTTAATATCATAAAAAT
                      ____________________________________________________________
consensus ATATCCCAAACAAACAAATTGTCTTTCCATCAATCTTGGAAGTCTTAATATCATAAAAAT
 
. : . : . : . : . : . :
JMFF003F24+ CCTCCATGCTTGCTCTCTTTCCTCGGAAGCTAGAATAACCACAACTCAACCTTGCATCTT
                      ____________________________________________________________
consensus CCTCCATGCTTGCTCTCTTTCCTCGGAAGCTAGAATAACCACAACTCAACCTTGCATCTT
 
. : . : . : . : . : . :
JMFF003F24+ CACTCTTCCATCCTCCACTGGCATAG-CCACCGTCATCATCCTTCTCAGGTTTAACATCT
JMSF010K06+ CTCCACTGGCATAGNCCACCGTCATCATCCTTCTCAGGTTTAACATCT
                      ____________________________________________________________
consensus CACTCTTCCATCCTCCACTGGCATAGNCCACCGTCATCATCCTTCTCAGGTTTAACATCT
 
. : . : . : . : . : . :
JMFF003F24+ TGTTTAGCCATTGAACTAGTATCTGCCATCATCTTTCTTCTTGTTGTAACTCTACAATCC
JMSF010K06+ TGTTTAGCCATTGAACTAGTATCTGCCATCATCTTTCTTCTTGTTGTAACTCTACAATCC
                      ____________________________________________________________
consensus TGTTTAGCCATTGAACTAGTATCTGCCATCATCTTTCTTCTTGTTGTAACTCTACAATCC
 
. : . : . : . : . : . :
JMFF003F24+ CAAATATTATAGCTTATGTTTCTAGTTGCAATCAAAATTGGAACAAAGTTATTAAACTGC
JMSF010K06+ CAAATATTATAGCTTATGTTTCTAGTTGCAATCAAAATTGGAACAAAGTTATTAAACTGC
                      ____________________________________________________________
consensus CAAATATTATAGCTTATGTTTCTAGTTGCAATCAAAATTGGAACAAAGTTATTAAACTGC
 
. : . : . : . : . : . :
JMFF003F24+ CTTCCCACTGCATATCTCACAATCCGTGGAGCTTGAAAAATCCCAAATTGTCCAGCTTCA
JMSF010K06+ CTTCCCACTGCATATCTCACAATCCGTGGAGCTTGAAAAATCCCAAATTGTCCAGCTTCA
                      ____________________________________________________________
consensus CTTCCCACTGCATATCTCACAATCCGTGGAGCTTGAAAAATCCCAAATTGTCCAGCTTCA
 
. : . : . : . : . : . :
JMFF003F24+ ACAACCACAGATCCCAAGCAACTAGTGCATACCATCTAAATCAATTACATCAGCTATAAG
JMSF010K06+ ACAACCACAGATCCCAAGCAACTAGTGCATACCATCTAAATCAATTACATCAGCTATAAG
                      ____________________________________________________________
consensus ACAACCACAGATCCCAAGCAACTAGTGCATACCATCTAAATCAATTACATCAGCTATAAG
 
. : . : . : . : . : . :
JMFF003F24+ TGAATGCCATGACTCAGACTTCAGATACACGAGAGAGACCGCGAGCTGTTGAAGCTTTGG
JMSF010K06+ TGAATGCCATGACTCAGACTTCAGATACACGAGAGAGACCGCGAGCTGTTGAAGCTTTGG
                      ____________________________________________________________
consensus TGAATGCCATGACTCAGACTTCAGATACACGAGAGAGACCGCGAGCTGTTGAAGCTTTGG
 
. : . : . : . : . : . :
JMFF003F24+ AAGTGAGTAGTGACCGAAGAGAAAGATGCAACGTGGCAGTCCTCATGCATCTGCTG
JMSF010K06+ AAGTGAGTAGTGACCGAAGAGAAAGATGCAACGTGGCAGTCCTCATGCATCTGCTGCCTC
                      ____________________________________________________________
consensus AAGTGAGTAGTGACCGAAGAGAAAGATGCAACGTGGCAGTCCTCATGCATCTGCTGCCTC