Previous Contig 005074:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047E04Sequence414005074 (3)gb:AP003709_18322527e-16Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJN383010720 (5)
JMSF009G22Sequence288005074 (3)787010720 (5)gb:AB024033_15157802e-36Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21.>gb:AC069474_154
JMSF028E05Sequence627005074 (3)gb:AY140051_15824911e-42Arabidopsis thaliana CTP synthase-like protein (At4g02120) mRNA, complete cds.732010720 (5)gb:AB024033_15157805e-32Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21.>gb:AC069474_154

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028E05+ TACTGATTCAATCCAATTCTTAATGGCATC
                      ____________________________________________________________
consensus TACTGATTCAATCCAATTCTTAATGGCATC
 
. : . : . : . : . : . :
JMSF028E05+ AGTAATGTGTGGGACAACCTGAACAGTTTTTCCAAGATAGTCACCTCTCCGTTCCTTCTC
                      ____________________________________________________________
consensus AGTAATGTGTGGGACAACCTGAACAGTTTTTCCAAGATAGTCACCTCTCCGTTCCTTCTC
 
. : . : . : . : . : . :
JMFF047E04+ ATC
JMSF028E05+ AAGCACAGACTGATATATCTTTCCTGTTGTAATATTGTTGTCCCTCGTAAGTGTGACATC
                      ____________________________________________________________
consensus AAGCACAGACTGATATATCTTTCCTGTTGTAATATTGTTGTCCCTCGTAAGTGTGACATC
 
. : . : . : . : . : . :
JMFF047E04+ TAAAAACCGTTCATAATTGCCCAAATCTAGATCAACCTCTCCACCATCGTCAAGCACAAA
JMSF028E05+ TAAAAACCGTTCATAATTGCCCAAATCTAGATCAACCTCTCCACCATCGTCAAGCACAAA
                      ____________________________________________________________
consensus TAAAAACCGTTCATAATTGCCCAAATCTAGATCAACCTCTCCACCATCGTCAAGCACAAA
 
. : . : . : . : . : . :
JMFF047E04+ AACTTCCCCATGCTCGAAAGGAGACATTGTACCGGCATCAGTGTTCAAGTATGGATCAAT
JMSF028E05+ AACTTCCCCATGCTCGAAAGGAGACATTGTACCGGCATCAGTGTTCAAATATGGATCAAT
                      ____________________________________________________________
consensus AACTTCCCCATGCTCGAAAGGAGACATTGTACCGGCATCAGTGTTCAAGTATGGATCAAT
 
. : . : . : . : . : . :
JMFF047E04+ TTTGATGGAGGTAACGCGAAGGCCGCAGGCTTTGAGAACAACACCGATACTGCTGGCAGT
JMSF028E05+ TTTGATGGAGGTAACGCGAAGGCCGCAGGCTTTGAGAACAACACCGATACTGCTGGCAGT
                      ____________________________________________________________
consensus TTTGATGGAGGTAACGCGAAGGCCGCAGGCTTTGAGAACAACACCGATACTGCTGGCAGT
 
. : . : . : . : . : . :
JMFF047E04+ GACACCCTTGCCGAGGCCACTCACCACTCCTCCGGTCACCAAAACGTACTTCATTCTTCC
JMSF028E05+ GACACCCTTGCCGAGGCCACTCACCACTCCTCCGGTCACCAAAACGTACTTCATTCTTCC
JMSF009G22+ CGAGGCCACTCACCACTCCTCCGGTCACCAAAACGTACTTCATTCTTCC
                      ____________________________________________________________
consensus GACACCCTTGCCGAGGCCACTCACCACTCCTCCGGTCACCAAAACGTACTTCATTCTTCC
 
. : . : . : . : . : . :
JMFF047E04+ TTGCTTGGGTGTTTTTGGGCTTAGGGTATCGCAGTTGAGTTATCGGTTTGCTGTGATTGT
JMSF028E05+ TTGCTTGGGTGTTTTTGGGCTTAGGGTATCGCAGTTGAGTTATCGGTTTGCTGTGATTGT
JMSF009G22+ TTGCTTGGGTGTTTTTGGGCTTAGGGTATCGCAGTTGAGTTATCGGTTTGCTGTGATTGT
                      ____________________________________________________________
consensus TTGCTTGGGTGTTTTTGGGCTTAGGGTATCGCAGTTGAGTTATCGGTTTGCTGTGATTGT
 
. : . : . : . : . : . :
JMFF047E04+ GCCGCCGACCAACCACCCGCGTTAATGTCTGGGCAGGAAGGTTTATTATAAAGGTTCGAC
JMSF028E05+ GCCGCCGACCAACCACCCGCGTTAATGTCTGGGCAGGAAGGTTTATTATAAAGGTTCGAC
JMSF009G22+ GCCGCCGACCAACCACCCGCGTTAATGTCTGGGCAGGAAGGTTTATTATAAAGGTTCGAC
                      ____________________________________________________________
consensus GCCGCCGACCAACCACCCGCGTTAATGTCTGGGCAGGAAGGTTTATTATAAAGGTTCGAC
 
. : . : . : . : . : . :
JMFF047E04+ GAGTCTTTGAACTGTGGACGGTTGAAGAACCNCAAGTCTAATTGTCAAAC
JMSF028E05+ GAGTCTTTGAACTGTGGACGGTTGAAGAACC-CAAGTCTAATTGTCAAACGCTCTGCAGT
JMSF009G22+ GAGTCTTTGAACTGTGGACGGTTGAAGAACC-CAAGTCTAATTGTCAAACGCTCTGCAGT
                      ____________________________________________________________
consensus GAGTCTTTGAACTGTGGACGGTTGAAGAACC-CAAGTCTAATTGTCAAACGCTCTGCAGT
 
. : . : . : . : . : . :
JMSF028E05+ CGCTGTCCCTGTTTTTCATTTATATACGACGGCCTGATGGGTCTCTTCTCCGCC
JMSF009G22+ CGCTGTCCCTGTTTTTCATTTATATACGACGGCCTGATGGGTCTCTTCTCCGCCCGTATC
                      ____________________________________________________________
consensus CGCTGTCCCTGTTTTTCATTTATATACGACGGCCTGATGGGTCTCTTCTCCGCCCGTATC