Previous Contig 005047:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030G21Sequence519005047 (2)gb:AY052303_15626763e-45Arabidopsis thaliana AT5g11170/F2I11_60 mRNA, complete cds.>gb:AY059168_1564531 636009634 (3)gb:AP004225_18389489e-51Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B115
JMSF009A03Sequence278005047 (2)760009634 (3)gb:AY052303_15626761e-79Arabidopsis thaliana AT5g11170/F2I11_60 mRNA, complete cds.>gb:AY059168_1564531

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF030G21+ ACAAGGGCAGCAACTTGACCAGCAACAGGTTCAATCTGTTG
                      ____________________________________________________________
consensus ACAAGGGCAGCAACTTGACCAGCAACAGGTTCAATCTGTTG
 
. : . : . : . : . : . :
JMFF030G21+ CAAGGTTGAGAGGACAAAAACTGCAGTTTTGCCCATTCCAGATTTTGCTTGGCAAATTAC
                      ____________________________________________________________
consensus CAAGGTTGAGAGGACAAAAACTGCAGTTTTGCCCATTCCAGATTTTGCTTGGCAAATTAC
 
. : . : . : . : . : . :
JMFF030G21+ ATCCATACCCAGAATAGCTTGTGGAATACATTCATGTTGAACTTCGGAGGGATGCTCAAA
                      ____________________________________________________________
consensus ATCCATACCCAGAATAGCTTGTGGAATACATTCATGTTGAACTTCGGAGGGATGCTCAAA
 
. : . : . : . : . : . :
JMFF030G21+ CCCTGAATCCACAATAGCTCGCAGTAGCTCTGGCTTGAGAAGAAAGTCTCTGAAACCGGA
                      ____________________________________________________________
consensus CCCTGAATCCACAATAGCTCGCAGTAGCTCTGGCTTGAGAAGAAAGTCTCTGAAACCGGA
 
. : . : . : . : . : . :
JMFF030G21+ ACTATGAATTCCAACATAACCCTTCTTAACGGACTCGCCGTTGACTTTAGCTCCGACGGA
JMSF009A03+ CGGACTCGCCGTTGACTTTAGCTCCGACGGA
                      ____________________________________________________________
consensus ACTATGAATTCCAACATAACCCTTCTTAACGGACTCGCCGTTGACTTTAGCTCCGACGGA
 
. : . : . : . : . : . :
JMFF030G21+ ATCGGGGGCTTTTTCGTCCTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCATCATT
JMSF009A03+ ATCGGGGGCTTTTTCGTCCTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCATCATT
                      ____________________________________________________________
consensus ATCGGGGGCTTTTTCGTCCTCTTCCTCGTAGTCGAGAAGCTCCTCCTCGTAAGCATCATT
 
. : . : . : . : . : . :
JMFF030G21+ CTCCTTGTTTTCTCCCATTACTGCTTCTTCTTGTAGAATCTATATGAGAGAGTAGGATTT
JMSF009A03+ CTCCTTGTTTTCTCCCATTACTGCTTCTTCTTGTAGAATCTATATGAGATAGTAGGATTT
                      ____________________________________________________________
consensus CTCCTTGTTTTCTCCCATTACTGCTTCTTCTTGTAGAATCTATATGAGATAGTAGGATTT
 
. : . : . : . : . : . :
JMFF030G21+ TGGAAGGGATTCGTGTTAGTTAGGCGTTAGGGTTTGAGTTCTGCAGAGAAAACGTTAGGC
JMSF009A03+ TGGAAGGGATTCGTGTTAGTTAGGCGTTAGGGTTTGAGTTCTGCAGAGAAAACGTTAGGC
                      ____________________________________________________________
consensus TGGAAGGGATTCGTGTTAGTTAGGCGTTAGGGTTTGAGTTCTGCAGAGAAAACGTTAGGC
 
. : . : . : . : . : . :
JMFF030G21+ TAATCGAAAAGAAAAACGAAAATTTAGAGAGAGAGAGAGATGTGGGGGAGATAGCGA
JMSF009A03+ TAATCGAAAAGAAAAACGAAAATTTAGAGAGAGAGAGAGATGTGGGGGAGATAGCGACCC
                      ____________________________________________________________
consensus TAATCGAAAAGAAAAACGAAAATTTAGAGAGAGAGAGAGATGTGGGGGAGATAGCGACCC