Previous Contig 005001:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008I11Sequence326005001 (2)gb:AY086173_15712285e-14Arabidopsis thaliana clone 21956 mRNA, complete sequence.762011448 (2)gb:AP004678_18432217e-65Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ11
JMSF049E04Sequence705005001 (2)gb:AY086173_1571228e-114Arabidopsis thaliana clone 21956 mRNA, complete sequence.778011448 (2)gb:AP004678_18432211e-80Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ11

Alignment

This contig is upended


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JMSF049E04+ GA
                      ____________________________________________________________
consensus GA
 
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JMSF049E04+ ATGTGTTGGCCACCGACCGTAAACCATAATTCTTCCCCTAGCTTAACACGCACTTCCTCC
                      ____________________________________________________________
consensus ATGTGTTGGCCACCGACCGTAAACCATAATTCTTCCCCTAGCTTAACACGCACTTCCTCC
 
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JMSF049E04+ ATATAAAGGCTTCCAGCGGGCAAAGGAGGAGCACAAGCCTTGTCCATCGAGGACCCCACA
                      ____________________________________________________________
consensus ATATAAAGGCTTCCAGCGGGCAAAGGAGGAGCACAAGCCTTGTCCATCGAGGACCCCACA
 
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JMSF049E04+ CCGACTTTACTGCCCGTAGAACTATCGTATATCGAGACACGACATGTAACAGGAGTTGTG
                      ____________________________________________________________
consensus CCGACTTTACTGCCCGTAGAACTATCGTATATCGAGACACGACATGTAACAGGAGTTGTG
 
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JMSF049E04+ CCATCAGGGAATTCCAGAGGCAGTTCCGCTTCTCCATCACGACAACATTCTGTATACTGT
                      ____________________________________________________________
consensus CCATCAGGGAATTCCAGAGGCAGTTCCGCTTCTCCATCACGACAACATTCTGTATACTGT
 
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JMSF049E04+ GAGGGAATTGGGAAAGCAAACGACAACCCCGGGTAAAATAACGTGTAAACACCTCTGTCT
                      ____________________________________________________________
consensus GAGGGAATTGGGAAAGCAAACGACAACCCCGGGTAAAATAACGTGTAAACACCTCTGTCT
 
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JMSF049E04+ TTGTCATACTTGCCAGGATATGTCGGACCAAAAAGAGCATAAACGGCAACAAAAGTGGCT
                      ____________________________________________________________
consensus TTGTCATACTTGCCAGGATATGTCGGACCAAAAAGAGCATAAACGGCAACAAAAGTGGCT
 
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JMSF049E04+ AGGGTGGATGGTCCTCCAATCAAAGAGGTAGCATAACGCATTTGAAGCCGTTTCACATCA
                      ____________________________________________________________
consensus AGGGTGGATGGTCCTCCAATCAAAGAGGTAGCATAACGCATTTGAAGCCGTTTCACATCA
 
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JMSF049E04+ AAAATTTCAATAAGACGCAGTCTCTGTGACCAAGGATCAAAGCGAAGATGAAAGCCATGG
                      ____________________________________________________________
consensus AAAATTTCAATAAGACGCAGTCTCTGTGACCAAGGATCAAAGCGAAGATGAAAGCCATGG
 
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JMSF049E04+ TCCGGGAAGCTGATAACAATATCAAGTTTTAAAGGATCCTCATCGTAATGCTTCACGTGA
                      ____________________________________________________________
consensus TCCGGGAAGCTGATAACAATATCAAGTTTTAAAGGATCCTCATCGTAATGCTTCACGTGA
 
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JMSF049E04+ ACAACATCATAAATGTTAGGCTTCTGCTCTATTTGAGCAAAGGCCTCGCAAATCGGCATT
JMSF008I11+ GAGCAAAGGCCTCGCAAATCGGCATT
                      ____________________________________________________________
consensus ACAACATCATAAATGTTAGGCTTCTGCTCTATTTGAGCAAAGGCCTCGCAAATCGGCATT
 
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JMSF049E04+ CCGAGAGAGAAGGGACCGATGCCGGCGCCGGGGCGGAGATCGAAAACGATGGCGCCCATG
JMSF008I11+ CCGAGAGAGAAGGGACCGATGCCGGCGCCGGGGCGGAGATCGAAAACGATGGCGCCCATG
                      ____________________________________________________________
consensus CCGAGAGAGAAGGGACCGATGCCGGCGCCGGGGCGGAGATCGAAAACGATGGCGCCCATG
 
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JMSF049E04+ GCTGTGCCTTCGCACCTGCGTCTCGGTCTCTGCTGCATCATT
JMSF008I11+ GCTGTGCCTTCGCACCTGCGTCTCGGTCTCTGCTGCATCATTATGAAGGACTTATTGTTA
                      ____________________________________________________________
consensus GCTGTGCCTTCGCACCTGCGTCTCGGTCTCTGCTGCATCATTATGAAGGACTTATTGTTA
 
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JMSF008I11+ TTATTACAAAAAATACATATATCGATTGAATTGCGATAGCTGATAGTGATGTCCAATTGA
                      ____________________________________________________________
consensus TTATTACAAAAAATACATATATCGATTGAATTGCGATAGCTGATAGTGATGTCCAATTGA
 
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JMSF008I11+ ATTTGAGGATGAAGAGATTTTTGCCACTCTTTGGCAGACGATTATAGGTGAGATGAGATG
                      ____________________________________________________________
consensus ATTTGAGGATGAAGAGATTTTTGCCACTCTTTGGCAGACGATTATAGGTGAGATGAGATG
 
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JMSF008I11+ AGATTGATTGCTTCAAGTAGACGGAGACGATGTGGTTGGAATTGGGAAAGGCAGAAAGCC
                      ____________________________________________________________
consensus AGATTGATTGCTTCAAGTAGACGGAGACGATGTGGTTGGAATTGGGAAAGGCAGAAAGCC