Previous Contig 004917:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007M01Sequence340004917 (2)721011397 (2)gb:AY085062_15701446e-75Arabidopsis thaliana clone 126051 mRNA, complete sequence.
JMSF021I24Sequence659004917 (2)gb:AY085062_15701441e-07Arabidopsis thaliana clone 126051 mRNA, complete sequence.781011397 (2)gb:AY085062_15701443e-75Arabidopsis thaliana clone 126051 mRNA, complete sequence.

Alignment

This contig is upended


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JMSF021I24+ CTATC
                      ____________________________________________________________
consensus CTATC
 
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JMSF021I24+ ACAACCACTTGGTTAAGCTGGCTCAGTAATAATATTGAATTCAAAAATGATATAACATGA
                      ____________________________________________________________
consensus ACAACCACTTGGTTAAGCTGGCTCAGTAATAATATTGAATTCAAAAATGATATAACATGA
 
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JMSF021I24+ GATAGGAATTTAGAGAATGTGAAGGAATCATTATTCTTCATTGAGCTCCAGAAGAAAGGA
                      ____________________________________________________________
consensus GATAGGAATTTAGAGAATGTGAAGGAATCATTATTCTTCATTGAGCTCCAGAAGAAAGGA
 
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JMSF021I24+ TTGGTGTCAATCAGCACCATCAATAAGCTTACATCATCTGTGTAAAGCTTTGATGATGCT
                      ____________________________________________________________
consensus TTGGTGTCAATCAGCACCATCAATAAGCTTACATCATCTGTGTAAAGCTTTGATGATGCT
 
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JMSF021I24+ GGAGCCATAGCCACTGGTTGATCAGGTAGAGATTATGTCAAATGGGAAATAGACAAGCTC
                      ____________________________________________________________
consensus GGAGCCATAGCCACTGGTTGATCAGGTAGAGATTATGTCAAATGGGAAATAGACAAGCTC
 
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JMSF021I24+ CAAAGCAGTGATGCTGAAAGTAGAGACTGGAGACCAGAGGGTCCAATGGAGATGATGAAT
                      ____________________________________________________________
consensus CAAAGCAGTGATGCTGAAAGTAGAGACTGGAGACCAGAGGGTCCAATGGAGATGATGAAT
 
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JMSF021I24+ GATTTGTTTGTTTGTTTTTCCTGGATTCTCTTCTATCTTTTATCACATCGTCGGGCTGCC
JMSF007M01+ CTGGATTCTCTTCTATCTTTTATCTCATCGTCGGGCTGCC
                      ____________________________________________________________
consensus GATTTGTTTGTTTGTTTTTCCTGGATTCTCTTCTATCTTTTATCTCATCGTCGGGCTGCC
 
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JMSF021I24+ TAGCATCGAAGCCCGAAAGGTGCACTGGAGCTGCCGAGCAGTGCTCGTCTAAGGCAGCAG
JMSF007M01+ TAGCATCGAAGCCCGAAGGGTGCACTGGAGCTGCCGAGCAGTGCTCGTCTAAGGCAGCAG
                      ____________________________________________________________
consensus TAGCATCGAAGCCCGAAGGGTGCACTGGAGCTGCCGAGCAGTGCTCGTCTAAGGCAGCAG
 
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JMSF021I24+ CCAAGGCGCCGAGCAGACGGAGCAGTGTTCGTCGAAGGACCTTGAAGAGTAGTCGCCGTT
JMSF007M01+ CCAAGGCGCCGAGCAGACGGAGCAGTGTTCGTCGAAGGACCTTGAAGAGTAGTCGCCGTT
                      ____________________________________________________________
consensus CCAAGGCGCCGAGCAGACGGAGCAGTGTTCGTCGAAGGACCTTGAAGAGTAGTCGCCGTT
 
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JMSF021I24+ TCAACCGTCGCGTGTCGCAGAGAGCCACAGACCGGAGAGTGGAGAATCGGAGACGGCGAG
JMSF007M01+ TCAACCGTCGCGTGTCGCAGAGAGCCACAGACCGGAGAGTGGAGAATCGGAGACGGCGAG
                      ____________________________________________________________
consensus TCAACCGTCGCGTGTCGCAGAGAGCCACAGACCGGAGAGTGGAGAATCGGAGACGGCGAG
 
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JMSF021I24+ ACGCAACAGATGATCAGAGCGGCAGGCTTCGGCCTTCGGTCTTCGCAGAGAGGCTGAGGG
JMSF007M01+ ACGCAACAGATGATCAGAGCGGCAGGCTTCGGCCTTCGGTCTTCGCAGAGAGGCTGAGGG
                      ____________________________________________________________
consensus ACGCAACAGATGATCAGAGCGGCAGGCTTCGGCCTTCGGTCTTCGCAGAGAGGCTGAGGG
 
. : . : . : . : . : . :
JMSF021I24+ AGAGTAGTCGCCGAGAGTGAGACAGTGCAGTGCTCCGGTTAGGGATTGAGGAC
JMSF007M01+ AGAGTAGTCGCCGAGAGTGAGACAGTGCAGTGCTCCGGTTAGGGATTGAGGACGGAGCTG
                      ____________________________________________________________
consensus AGAGTAGTCGCCGAGAGTGAGACAGTGCAGTGCTCCGGTTAGGGATTGAGGACGGAGCTG