| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007C04 | Sequence | 359 | 004858 (3) | gb:AP004346_1840584 | 3e-50 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P065 | 589 | 008075 (6) | gb:AB007644_1510137 | 1e-22 | Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19P17.>gb:BT015927_16 |
| JMSF021I23 | Sequence | 650 | 004858 (3) | pir|T00407|T00407 | 2e-63 | 60S ribosomal protein L30 [imported] - Arabidopsis thaliana>gb:AC002388_1530617 | 747 | 004858 (3) | pir|T00407|T00407 | 2e-63 | 60S ribosomal protein L30 [imported] - Arabidopsis thaliana>gb:AC002388_1530617 |
This contig is upended
. : . : . : . : . : . :
rJMSF021I23- ATGTTTGAACATTGTACCACATAACAAA
____________________________________________________________
consensus ATGTTTGAACATTGTACCACATAACAAA
. : . : . : . : . : . :
rJMSF021I23- AAAGATAGGGGTAGGAAGTAAGATGATGTGAAAAACATGACCAAAAAAATAAAATAAAAC
____________________________________________________________
consensus AAAGATAGGGGTAGGAAGTAAGATGATGTGAAAAACATGACCAAAAAAATAAAATAAAAC
. : . : . : . : . : . :
rJMSF021I23- AAAACTTTTGATGAGCAGAGATGAAATGTCCTCCTTGGGCTCAATGAAGCATTTGATTTT
JMSF021I23+ GATGAGCAGAGATGAAATGTCCTCCTTGGGCTCAATGAAGCATTTGATTTT
____________________________________________________________
consensus AAAACTTTTGATGAGCAGAGATGAAATGTCCTCCTTGGGCTCAATGAAGCATTTGATTTT
. : . : . : . : . : . :
rJMSF021I23- GGGACAAAATATATCACATGACAACACAGCAAAAAGACATTTACTCCTCCATGCGCTTTT
JMSF021I23+ GGGACAAAATATATCACATGACAACACAGCAAAAAGACATTTACTCCTCCATGCGCTTTT
____________________________________________________________
consensus GGGACAAAATATATCACATGACAACACAGCAAAAAGACATTTACTCCTCCATGCGCTTTT
. : . : . : . : . : . :
rJMSF021I23- CTTCTGATTGTTGTTGTGAAACCTTGACCTTGATGGGCAAGGTGAGGGATGGATCTTGTT
JMSF021I23+ CTTCTGATTGTTGTTGTGAAACCTTGACCTTGATGGGCAAGGTGAGGGATGGATCTTGTT
____________________________________________________________
consensus CTTCTGATTGTTGTTGTGAAACCTTGACCTTGATGGGCAAGGTGAGGGATGGATCTTGTT
. : . : . : . : . : . :
rJMSF021I23- GGAGAACAGAAGGAGCTTTGACCAAGTGGATACCCTGCTCCAGTTCCCTTGCTGCTTCTT
JMSF021I23+ GGAGAACAGAAGGAGCTTTGACCAAGTGGATACCCTGCTCCAGTTCCCTTGCTGCTTCTT
____________________________________________________________
consensus GGAGAACAGAAGGAGCTTTGACCAAGTGGATACCCTGCTCCAGTTCCCTTGCTGCTTCTT
. : . : . : . : . : . :
rJMSF021I23- TCTGCTTTCGAAGTTTGTTGGGTCTCATCCTGTTTTTGTGGTGAGCAGCCTCCCTAGCAA
JMSF021I23+ TCTGCTTTCGAAGTTTGTTGGGTCTCATCCTGTTTTTGTGGTGAGCAGCCTCCCTAGCAA
____________________________________________________________
consensus TCTGCTTTCGAAGTTTGTTGGGTCTCATCCTGTTTTTGTGGTGAGCAGCCTCCCTAGCAA
. : . : . : . : . : . :
rJMSF021I23- TTCTGACTTTATCGATTTTCTTTATGGCCTTCAAAGTGTTTTCTGTTACATTCTTGTCAA
JMSF021I23+ TTCTGACTTTATCGATTTTCTTTATGGCCTTCAAAGTGTTTTCTGTTACATTCTTGTCAA
JMSF007C04+ TCTGACTTTATCGATTTTCTTTATGGCCTTCAAAGTGTTTTCTGTTACATTCTNGTCAA
____________________________________________________________
consensus TTCTGACTTTATCGATTTTCTTTATGGCCTTCAAAGTGTTTTCTGTTACATTCTTGTCAA
. : . : . : . : . : . :
rJMSF021I23- ATCTCTCTGGCCTATTTCTCTTCCTCTCAAATTCAAATGTTGCGTCCTGGGTCATGTCCT
JMSF021I23+ ATCTCTCTGGCCTATTTCTCTTCCTCTCAAATTCAAATGTTGCGTCCTGGGTCATGTCCT
JMSF007C04+ ATCTCTCTGGCCTATTTCTCTTCCTCTCAAATTCAAATGTTGCGTCCTGGGTCATGTCCT
____________________________________________________________
consensus ATCTCTCTGGCCTATTTCTCTTCCTCTCAAATTCAAATGTTGCGTCCTGGGTCATGTCCT
. : . : . : . : . : . :
rJMSF021I23- TTCCATGTAACCGTCTATAGGCCTTAGTCCACTTAACCTTACGAGGATTCCTCTTCATCT
JMSF021I23+ TTCCATGTAACCGTCTATAGGCCTTAGTCCACTTAACCTTACGAGGATTCCTCTTCATCT
JMSF007C04+ TTCCATGTAACCGTCTATAGGCCTTAGTCCACTTAACCTTACGAGGATTCCTCTTCATCT
____________________________________________________________
consensus TTCCATGTAACCGTCTATAGGCCTTAGTCCACTTAACCTTACGAGGATTCCTCTTCATCT
. : . : . : . : . : . :
rJMSF021I23- TAAAGTTCTTGTGACATTTAGATCTGCAGAACCGAAAAATCTTTGCATCGTTTCGAACAA
JMSF021I23+ TAAAGTTCTTGTGACATTTAGATCTGCAGAACCGAAAAATCTTTGCATCGTTTCGAACAA
JMSF007C04+ TAAAGTTCTTGTGACATTTAGATCTGCAGAACCGAAAAATCTTTGCATCGTTTCGAACAA
____________________________________________________________
consensus TAAAGTTCTTGTGACATTTAGATCTGCAGAACCGAAAAATCTTTGCATCGTTTCGAACAA
. : . : . : . : . : . :
rJMSF021I23- ATTGAATACCATGGCCTGGGTAGATAGTTGATGAGCAAAACCAGCACTTTTCCAACCTCA
JMSF021I23+ ATTGAATACCATGGCCTGGGTAGATAGTTGATGAGCAAAACCAGCACTTTTCCAACCTCA
JMSF007C04+ ATTGAATACCATGGCCTGGGTAGATAGTTGATGAGCAAAACCAGCACTTTTCCAACCTCA
____________________________________________________________
consensus ATTGAATACCATGGCCTGGGTAGATAGTTGATGAGCAAAACCAGCACTTTTCCAACCTCA
. : . : . : . : . : . :
rJMSF021I23- TTATGTCTTCAACGGCGACCGCTGTCTTCAAAGGATGGCTGTGCAGGAGAACCGTCT
JMSF021I23+ TTATGTCTTCAACGGCGACCGCTGTCTTCAAAGGATGGCTGTGCAGGAGAACCGTCT
JMSF007C04+ TTATGTCTTCAACGGCGACCGCTGTCTTCAAAGGATGGCTGTGCAGGAGAACCGTCTCTC
____________________________________________________________
consensus TTATGTCTTCAACGGCGACCGCTGTCTTCAAAGGATGGCTGTGCAGGAGAACCGTCTCTC