| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009M12 | Sequence | 552 | 004761 (5) | gb:LES011418_1684456 | 6e-62 | Lycopersicon esculentum mRNA for ubiquitin activating enzyme. | 698 | 008645 (8) | gb:LES011418_1684456 | 3e-46 | Lycopersicon esculentum mRNA for ubiquitin activating enzyme. |
| JMFF010F21 | Sequence | 534 | 004761 (5) | gb:LES011418_1684456 | 1e-55 | Lycopersicon esculentum mRNA for ubiquitin activating enzyme. | 777 | 008645 (8) | gb:AY072375_1567192 | 2e-49 | Arabidopsis thaliana ubiquitin activating enzyme - like protein (At4g24940) mRNA |
| JMSF005O21 | Sequence | 265 | 004761 (5) | gb:LES011418_1684456 | 9e-15 | Lycopersicon esculentum mRNA for ubiquitin activating enzyme. | 449 | 008645 (8) | gb:AY072375_1567192 | 2e-19 | Arabidopsis thaliana ubiquitin activating enzyme - like protein (At4g24940) mRNA |
| JMSF006A09 | Sequence | 248 | 004761 (5) | gb:LES011418_1684456 | 1e-14 | Lycopersicon esculentum mRNA for ubiquitin activating enzyme. | 299 | 011363 (4) | |||
| JMSF006G02 | Sequence | 386 | 004761 (5) | gb:LES011418_1684456 | 3e-41 | Lycopersicon esculentum mRNA for ubiquitin activating enzyme. | |||||
This contig is upended
. : . : . : . : . : . :
JMFF009M12+ TAACATCCACGGCATAAAAAGCAATGCGCTTTGACAACTTTCGACACT
JMFF010F21+ ACT
____________________________________________________________
consensus TAACATCCACGGCATAAAAAGCAATGCGCTTTGACAACTTTCGACACT
. : . : . : . : . : . :
JMFF009M12+ TTGCATTTACAGATTTCTTTGTTGAAAGAGAGCAGTGGCTGATAACAACAGCGTCAAACT
JMFF010F21+ TTGCATTTACAGATTTCTTTGTTGAAAGAGAGCAGTGGCTGATAACAACAGCGTCAAACT
____________________________________________________________
consensus TTGCATTTACAGATTTCTTTGTTGAAAGAGAGCAGTGGCTGATAACAACAGCGTCAAACT
. : . : . : . : . : . :
JMFF009M12+ TATCAAAGAAATCAGCATCAAAACTTGACAAATCACCTTTTTGGACAGAAACATAAACCA
JMFF010F21+ TATCAAAGAAATCAGCATCAAAACTTGACAAATCACCTTTTTGGACAGAAACATAAACCA
____________________________________________________________
consensus TATCAAAGAAATCAGCATCAAAACTTGACAAATCACCTTTTTGGACAGAAACATAAACCA
. : . : . : . : . : . :
JMFF009M12+ TAGGGTTGAATTCTTTCAAAGAATCACAACAGAGCTCGGCAACAGATTTCCCACCGAAAA
JMFF010F21+ TAGGGTTGAATTCTTTCAAAGAATCACAACAGAGCTCGGCAACAGATTTCCCACCTAAAA
____________________________________________________________
consensus TAGGGTTGAATTCTTTCAAAGAATCACAACAGAGCTCGGCAACAGATTTCCCACCTAAAA
. : . : . : . : . : . :
JMFF009M12+ CATTTTCATCTGGGGGAATGAGGAAATTAGCAGAAAGTAATTCCTCGGTCACCATGCGAT
JMFF010F21+ CATTTTCATCTGGGGGAATGAGGAAATTAGCAGAAAGTAATTCCTCGGTCACCATGCGAT
____________________________________________________________
consensus CATTTTCATCTGGGGGAATGAGGAAATTAGCAGAAAGTAATTCCTCGGTCACCATGCGAT
. : . : . : . : . : . :
JMFF009M12+ CATCATTCAGCGTCAAACTACCAACTCCAGCTAAAACAATATTTTTGCAGAACTCTACAG
JMSF006G02+ CTCTACAG
JMSF005O21+ CTCTACAG
JMFF010F21+ CATCATTCAGCGTCAAACTACCAACTCCAGCTAAAACAATATTTTTGCAGAACTCTACAG
JMSF006A09+ CTCTACAG
____________________________________________________________
consensus CATCATTCAGCGTCAAACTACCAACTCCAGCTAAAACAATATTTTTGCAGAACTCTACAG
. : . : . : . : . : . :
JMFF009M12+ CAGTCCCTTTGAGTCCACTGACAAACACATGAGCTTTACTGAGGCGTCTTTGAGCATCAA
JMSF006G02+ CAGTCCCTTTGAGTCCACTGACAAACACATGAGCTTTACTGAGGCGTCTTTGAGCATCAA
JMSF005O21+ CAGTCCCTTTGAGTCCACTGACAAACACATGAGCTTTACTGAGGCGTCTTTGAGCATCAA
JMFF010F21+ CAGTCCCTTTGAGTCCACTGACAAACACATGAGCTTTACTGAGGCGTCTTTGAGCATCAA
JMSF006A09+ CAGTCCCTTTGAGTCCACTGACAAACACATGAGCTTTACTGAGGCGTCTTTGAGCATCAA
____________________________________________________________
consensus CAGTCCCTTTGAGTCCACTGACAAACACATGAGCTTTACTGAGGCGTCTTTGAGCATCAA
. : . : . : . : . : . :
JMFF009M12+ CGCCCCAGACCCTAATCTGACGATCGTAGATGGCAGTTTCCTGCTCTGTCAACTCCGCTC
JMSF006G02+ CGCCCCAGACCCTAATCTGACGATCGTAGATGGCAGTTTCCTGCTCTGTCAACTCCGCTC
JMSF005O21+ CGCCCCAGACCCTAATCTGACGATCGTAGATGGCAGTTTCCTGCTCTGTCAACTCCGCTC
JMFF010F21+ CGCCCCAGACCCTAATCTGACGATCGTAGATGGCAGTTTCCTGCTCTGTCAACTCCGCTC
JMSF006A09+ CGCCCCAGACCCTAATCTGACGATCGTAGATGGCAGTTTCCTGCTCTGTCAACTCCGCTC
____________________________________________________________
consensus CGCCCCAGACCCTAATCTGACGATCGTAGATGGCAGTTTCCTGCTCTGTCAACTCCGCTC
. : . : . : . : . : . :
JMFF009M12+ GCTCCATATTCCCGAACAAAACAGCTGTAAGAATCAAGAGTTGAGGGTAGTGCGAACCGT
JMSF006G02+ GCTCCATATTCCCGAACAAAACAGCTGTAAGAATCAAGAGTTGAGGGTAGTGCGAACCGT
JMSF005O21+ GCTCCATATTCCCGAACAAAACAGCTGTAAGAATCAAGAGTTGAGGGTAGTGCGAACCGT
JMFF010F21+ GCTCCATATTCCCGAACAAAACAGCTGTAAGAATCAAGAGTTGAGGGTAGTGCGAACCGT
JMSF006A09+ GCTCCATATTCCCGAACAAAACAGCTGTAAGAATCAAGAGTTGAGGGTAGTGCGAACCGT
____________________________________________________________
consensus GCTCCATATTCCCGAACAAAACAGCTGTAAGAATCAAGAGTTGAGGGTAGTGCGAACCGT
. : . : . : . : . : . :
JMFF009M12+ CTTCTTCCTTAGGCTC
JMSF006G02+ CTTCTTCCTTAGGCTCCTTGCTCGACAAGTCGACAGTTGCCCTCT
JMSF005O21+ CTTCTTCCTTAGGCTCCTTGCTCGACAAGTCGACAGTTGCCCTCT
JMFF010F21+ CTTCTTCCTTAGGCTCCTTGCTCGACAAGTCGACAGTTGCCCTCTATCCGT
JMSF006A09+ CTTCTTCCTTAGGCTCCTTGCTCGACAAGTCGACAGTTGCCCTCTATCCGTGATTTTCCC
____________________________________________________________
consensus CTTCTTCCTTAGGCTCCTTGCTCGACAAGTCGACAGTTGCCCTCTATCCGTGATTTTCCC