clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS076B07 | Sequence | 615 | 004679 (3) | ||||||||
JMSF005C02 | Sequence | 324 | 004679 (3) | ||||||||
JMSF039A22 | Sequence | 670 | 004679 (3) | gb:AC132492_1741207 | 2e-16 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete seq | 850 | 023836 | gb:AC132492_1741207 | 2e-08 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete seq |
This contig is upended
. : . : . : . : . : . :
JMSF039A22+ TGAGACATAT
____________________________________________________________
consensus TGAGACATAT
. : . : . : . : . : . :
JMSF039A22+ CAAAGTCANCCACAGATGTTGAGCCATTCGCAACTTCCTCAGAATTTAACGGTCTACATC
____________________________________________________________
consensus CAAAGTCANCCACAGATGTTGAGCCATTCGCAACTTCCTCAGAATTTAACGGTCTACATC
. : . : . : . : . : . :
JMSF039A22+ TACAGAAAACCCGAATGTTGCCTTTCAACTCAATTACTTCATTGTAGAGCCGCTTCCTCT
____________________________________________________________
consensus TACAGAAAACCCGAATGTTGCCTTTCAACTCAATTACTTCATTGTAGAGCCGCTTCCTCT
. : . : . : . : . : . :
JMSF039A22+ CTGAGCACTCATCAAGATATCTTTTCTTCAAAACAGCACACTCTTCGTCATATTTCGTCC
____________________________________________________________
consensus CTGAGCACTCATCAAGATATCTTTTCTTCAAAACAGCACACTCTTCGTCATATTTCGTCC
. : . : . : . : . : . :
JMFS076B07+ ACTAAGATCCTTAAGAGCGCAGAAAACTTCAGGACAAGGAA
JMSF039A22+ TAAGAAGTTCATGTTGCACACTAAGATCCTTAAGAGCGCAGAAAACTTCAGGACAAGGAA
____________________________________________________________
consensus TAAGAAGTTCATGTTGCACACTAAGATCCTTAAGAGCGCAGAAAACTTCAGGACAAGGAA
. : . : . : . : . : . :
JMFS076B07+ AAGAATCTCCAGTGATACCCTTCACTTCATCACTTAAAGCTGCATGTTCTTTTCTCAATT
JMSF039A22+ AAGAATCTCCAGTGATACCCTTCACTTCATCACTTAAAGCTGCATGTTCTTTTCTCAATT
____________________________________________________________
consensus AAGAATCTCCAGTGATACCCTTCACTTCATCACTTAAAGCTGCATGTTCTTTTCTCAATT
. : . : . : . : . : . :
JMFS076B07+ CATGTACTTTAGTGGACAGGTCTTCAATTTTCTGAAAAATAGGAAGAGTTTGTTCTTGGT
JMSF039A22+ CATGTACTTTAGTGGACAGGTCTTCAATTTTCTGAAAAATAGGAAGAGTTTGTTCTTGGT
JMSF005C02+ AAATAGGAAGAGTTTGTTCTTGGT
____________________________________________________________
consensus CATGTACTTTAGTGGACAGGTCTTCAATTTTCTGAAAAATAGGAAGAGTTTGTTCTTGGT
. : . : . : . : . : . :
JMFS076B07+ ATGAAATTTCTGGGGTGTCACTTGAAACAATACTCTCATCCCCCAAATCAGTGCTCACTT
JMSF039A22+ ATGAAATTTCTGGGGTGTCACTTGAAACAATACTCTCATCCCCCAAATCAGTGCTCACTT
JMSF005C02+ ATGAAATTTCTGGGGTGTCACTTGAAACAATACTCTCATCCCCCAAATCAGTGCTCACTT
____________________________________________________________
consensus ATGAAATTTCTGGGGTGTCACTTGAAACAATACTCTCATCCCCCAAATCAGTGCTCACTT
. : . : . : . : . : . :
JMFS076B07+ CTACTGTTTCGGCTTTGTGAATCAACGGCGGCTCGTAATTCTCAACGGAGACGGTCAAAA
JMSF039A22+ CTACTGTTTCGGCTTTGTGAATCAACGGCGGCTCGTAATTCTCAACGGAGACGGTCAAAA
JMSF005C02+ CTACTGTTTCGGCTTTGTGAATCAACGGCGGCTCGTAATTCTCAACGGAGACGGTCAAAA
____________________________________________________________
consensus CTACTGTTTCGGCTTTGTGAATCAACGGCGGCTCGTAATTCTCAACGGAGACGGTCAAAA
. : . : . : . : . : . :
JMFS076B07+ CTTTACCAAAATCGTCGCAGAGAGTCGCAATAGTTTGATCGTCCATGAGTAGACCACAAT
JMSF039A22+ CTTTACCAAAATCGTCGCAGAGAGTCGCAATAGTTTGATCGTCCATGAGTAGACCACAAT
JMSF005C02+ CTTTACCAAAATCGTCGCAGAGAGTCGCAATAGTTTGATCGTCCATGAGTAGACCACAAT
____________________________________________________________
consensus CTTTACCAAAATCGTCGCAGAGAGTCGCAATAGTTTGATCGTCCATGAGTAGACCACAAT
. : . : . : . : . : . :
JMFS076B07+ TATCAGAAATCGGCAAAGAGTACAATGAATTTCAGAGCTCGCAGACCAAATGTAGTGGAG
JMSF039A22+ TATCAGAAATCGGCAAAGAGTACAATGAATTTCAGAGCTCGCAGACCAAATGTAGTGGAG
JMSF005C02+ TATCAGAAATCGGCAAAGAGTACAATGAATTTCAGAGCTCGCAGACCAAATGTAGTGGAG
____________________________________________________________
consensus TATCAGAAATCGGCAAAGAGTACAATGAATTTCAGAGCTCGCAGACCAAATGTAGTGGAG
. : . : . : . : . : . :
JMFS076B07+ AAAGGAGAAGAAGACGAA
JMSF039A22+ AAAGGAGAAGAAGACGAAGTTGAAAGCTTGAGAGAGAGAGAGAGAGAGGACTAAACGGCC
JMSF005C02+ AAAGGAGAAGAAGACGAAGTTGAAAGCTTGAGAGAGAGAGAGAGAGAGGACTAAACGGCC
____________________________________________________________
consensus AAAGGAGAAGAAGACGAAGTTGAAAGCTTGAGAGAGAGAGAGAGAGAGGACTAAACGGCC