Previous Contig 004672:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005B14Sequence252004672 (3)gb:AF360339_17912850.005Arabidopsis thaliana unknown protein (At1g15740) mRNA, complete cds.340011826 (3)gb:AF360339_17912853e-04Arabidopsis thaliana unknown protein (At1g15740) mRNA, complete cds.
JMSF015H06Sequence552004672 (3)gb:AF360339_17912857e-37Arabidopsis thaliana unknown protein (At1g15740) mRNA, complete cds.739011826 (3)gb:AF360339_17912854e-25Arabidopsis thaliana unknown protein (At1g15740) mRNA, complete cds.
JMSF043C20Sequence816004672 (3)gb:AF360339_17912856e-69Arabidopsis thaliana unknown protein (At1g15740) mRNA, complete cds.838011826 (3)gb:AF360339_17912855e-42Arabidopsis thaliana unknown protein (At1g15740) mRNA, complete cds.

Alignment

This contig is upended


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JMSF043C20+ TTAGGGCATCTCTCCAGGTCCNATTTCACCAAATTGAT
                      ____________________________________________________________
consensus TTAGGGCATCTCTCCAGGTCCNATTTCACCAAATTGAT
 
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JMSF043C20+ TAAGCCAGATAGAGCATCCATTCCCTGAGCTGTAATCATGGTGTTTCTTCTAAAACTTAG
                      ____________________________________________________________
consensus TAAGCCAGATAGAGCATCCATTCCCTGAGCTGTAATCATGGTGTTTCTTCTAAAACTTAG
 
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JMSF043C20+ ACTCGTCAAGTTTGAAAAACCACTAACATGCTCCAGTCCATGGTCTGTAATTTGGTCACA
                      ____________________________________________________________
consensus ACTCGTCAAGTTTGAAAAACCACTAACATGCTCCAGTCCATGGTCTGTAATTTGGTCACA
 
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JMSF043C20+ ATAGTTAAAATTTAGTGCTTGCAGATTTTTGCAATCTTTTAGCTGCACTATTCCAGAATC
                      ____________________________________________________________
consensus ATAGTTAAAATTTAGTGCTTGCAGATTTTTGCAATCTTTTAGCTGCACTATTCCAGAATC
 
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JMSF043C20+ AGTGATATCGGAAGCAGAAAGATCCACGGATAGCAGGGAAGAACCCTGTGAAGAGATTAC
JMSF015H06+ TGAAGAGATTAC
                      ____________________________________________________________
consensus AGTGATATCGGAAGCAGAAAGATCCACGGATAGCAGGGAAGAACCCTGTGAAGAGATTAC
 
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JMSF043C20+ ATCCATCCAAGTATCATCAAGGCAAGGATATTCTCCCAAATTAAGATCCTGAAGAGCACA
JMSF015H06+ ATCCATCCAAGTATCATCAAGGCAAGGATATTCTCCCAAATTAAGATCCTGAAGAGCACA
                      ____________________________________________________________
consensus ATCCATCCAAGTATCATCAAGGCAAGGATATTCTCCCAAATTAAGATCCTGAAGAGCACA
 
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JMSF043C20+ ATCTCGAAATGCTTCAAGAATGACTTTAGTAAGACGTTGTGAACAAACCAATTCATCAAA
JMSF015H06+ ATCTCGAAATGCTTCAAGAATGACTTTAGTAAGACGTTGTGAACAAACCAATTCATCAAA
                      ____________________________________________________________
consensus ATCTCGAAATGCTTCAAGAATGACTTTAGTAAGACGTTGTGAACAAACCAATTCATCAAA
 
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JMSF043C20+ GATTTGTTGACTTATGTCCCTTGGCAGCATAGAGAAGGTGCTATATTTGTCAATGTCTTG
JMSF015H06+ GATTTGTTGACTTATGTCCCTTGGCAGCATAGAGAAGGTGCTATATTTGTCAATGTCTTG
                      ____________________________________________________________
consensus GATTTGTTGACTTATGTCCCTTGGCAGCATAGAGAAGGTGCTATATTTGTCAATGTCTTG
 
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JMSF043C20+ ACAAATTTGATAGATGCACAATTCCATGAGAGAAGGGCAATTTCCATTTCCATGCCTAGG
JMSF015H06+ ACAAATTTGATAGATGCACAATTCCATGAGAGAAGGGCAATTTCCATTTCCATGCCTAGG
                      ____________________________________________________________
consensus ACAAATTTGATAGATGCACAATTCCATGAGAGAAGGGCAATTTCCATTTCCATGCCTAGG
 
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JMSF043C20+ ATCTATAGATGACCGCGAAAGTGAACTTCCTAGCCATTTTGAACTACCACTCTTGCAATA
JMSF015H06+ ATCTATAGATGACCGCGAAAGTGAACTTCCTAGCCATTTTGAACTACCACTCTTGCAATA
JMSF005B14+ ACTCTTGCAATA
                      ____________________________________________________________
consensus ATCTATAGATGACCGCGAAAGTGAACTTCCTAGCCATTTTGAACTACCACTCTTGCAATA
 
. : . : . : . : . : . :
JMSF043C20+ TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
JMSF015H06+ TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
JMSF005B14+ TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
                      ____________________________________________________________
consensus TCGTCCTGAAACTCCTCTATGTATGCTGTCATCCTCAGCCAGTTGGTCTCGCTTTCTAGA
 
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JMSF043C20+ ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
JMSF015H06+ ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
JMSF005B14+ ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
                      ____________________________________________________________
consensus ACAAACTCCCCCCATCTGAGACACTGTTGTTGATTCACATTTGCAGATCACAGGTGGAAT
 
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JMSF043C20+ AGTACATTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGC
JMSF015H06+ AGTACACTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGC
JMSF005B14+ AGTACATTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGCCTTCAACTCTGGAAA
                      ____________________________________________________________
consensus AGTACATTTGGCTGTTAAATTTTTAAGGCAGACATTCTACAGAGCCTTCAACTCTGGAAA
 
. : . : . : . : . : . :
JMSF005B14+ ACTGAACGATCAATTTGTTTAAAGTCTGGAGAGAGAGAGAGGGAGAAGTGGAAAGTTTCC
                      ____________________________________________________________
consensus ACTGAACGATCAATTTGTTTAAAGTCTGGAGAGAGAGAGAGGGAGAAGTGGAAAGTTTCC